SMTL ID : 6uh8.2 (2 other biounits)

Crystal structure of DAD2 N242I mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

monomer

Ligands

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1: 9 residues within 4Å: Chain A: F.29, S.98, F.127, F.137, V.145, F.160, F.196, S.221, H.248 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.98, A:S.221 Salt bridges: A:H.248

6 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.3: 1 residues within 4Å: Chain A: D.74 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.74, H2O.1, H2O.2 MG.4: 1 residues within 4Å: Chain A: N.12 No protein-ligand interaction detected (PLIP) MG.5: 1 residues within 4Å: Chain A: V.13 No protein-ligand interaction detected (PLIP) MG.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.7: 1 residues within 4Å: Chain A: H.233 No protein-ligand interaction detected (PLIP)

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.8: 3 residues within 4Å: Chain A: P.223, A.224, S.225 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.224, A:S.225, A:S.225 SO4.9: 3 residues within 4Å: Chain A: L.81, R.110, R.111 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.110 Salt bridges: A:R.110, A:R.111 SO4.10: 4 residues within 4Å: Chain A: R.38, A.254, P.255, T.256 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.256, A:T.256 Water bridges: A:L.257 Salt bridges: A:R.38

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.11: 5 residues within 4Å: Chain A: Y.133, H.134, S.225, V.226, Y.229 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, H.W. et al., Flexibility of the petunia strigolactone receptor DAD2 promotes its interaction with signaling partners. J.Biol.Chem. (2020)

Release Date

2020-02-26

Peptides

Decreased Apical Dominance 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Decreased Apical Dominance 2

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