SMTL ID : 6uh8.3 (2 other biounits)

Crystal structure of DAD2 N242I mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

homo-dimer

Ligands

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1: 10 residues within 4Å: Chain A: F.29, S.98, F.127, F.137, I.142, F.160, V.195, F.196, S.221, H.248 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.98, A:S.221 Salt bridges: A:H.248 pi-Cation interactions: A:F.196 MES.4: 9 residues within 4Å: Chain B: F.29, S.98, F.127, F.137, V.145, F.160, F.196, S.221, H.248 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.98, B:S.221 Salt bridges: B:H.248

7 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.6: 2 residues within 4Å: Chain A: E.261 Chain B: D.74 6 PLIP interactions: 1 interactions with chain B, 5 Ligand-Water interactions Metal complexes: B:D.74, H2O.1, H2O.2, H2O.7, H2O.9, H2O.9 MG.7: 1 residues within 4Å: Chain B: N.12 No protein-ligand interaction detected (PLIP) MG.8: 1 residues within 4Å: Chain B: V.13 No protein-ligand interaction detected (PLIP) MG.9: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.10: 1 residues within 4Å: Chain B: H.233 No protein-ligand interaction detected (PLIP)

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: Y.133, H.134, S.225, V.226, Y.229 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.134 GOL.14: 5 residues within 4Å: Chain B: Y.133, H.134, S.225, V.226, Y.229 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.134

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.11: 3 residues within 4Å: Chain B: P.223, A.224, S.225 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.224, B:S.225, B:S.225 SO4.12: 3 residues within 4Å: Chain B: L.81, R.110, R.111 4 PLIP interactions: 4 interactions with chain B Water bridges: B:R.110, B:R.110 Salt bridges: B:R.110, B:R.111 SO4.13: 4 residues within 4Å: Chain B: R.38, A.254, P.255, T.256 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.256, B:T.256 Water bridges: B:L.257 Salt bridges: B:R.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, H.W. et al., Flexibility of the petunia strigolactone receptor DAD2 promotes its interaction with signaling partners. J.Biol.Chem. (2020)

Release Date

2020-02-26

Peptides

Decreased Apical Dominance 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Decreased Apical Dominance 2

Related Entries With Identical Sequence