SMTL ID : 6um1.1

Structure of M-6-P/IGFII Receptor at pH 4.5

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY 3.46 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.444, T.446, D.470 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 4 residues within 4Å: Chain A: Q.572, S.574, N.590, F.615 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: N.120, Q.133, D.462 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.133 NAG.4: 5 residues within 4Å: Chain A: N.1030, T.1032, R.1041, A.1044, I.1046 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.1046 NAG.5: 10 residues within 4Å: Chain A: S.913, L.914, W.916, K.1319, N.1321, T.1323, S.1335, T.1337, S.1359, L.1361 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:K.1319, A:T.1337, A:L.1361 Hydrogen bonds: A:N.1321, A:T.1323, A:T.1323, A:S.1335, A:T.1337, A:S.1359

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, R. et al., Marked structural rearrangement of mannose 6-phosphate/IGF2 receptor at different pH environments. Sci Adv (2020)

Release Date

2020-02-26

Peptides

Cation-independent mannose-6-phosphate receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cation-independent mannose-6-phosphate receptor

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