SMTL ID : 6um2.1

Structure of M-6-P/IGFII Receptor and IGFII complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 4.32 Å

Oligo State

hetero-1-1-mer

Ligands

7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: S.574, N.590 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.574, A:N.590 NAG.2: 1 residues within 4Å: Chain A: N.755 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.755 NAG.3: 2 residues within 4Å: Chain A: K.862, N.879 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.862, A:N.879 NAG.4: 1 residues within 4Å: Chain A: S.961 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.961, A:S.961 NAG.5: 5 residues within 4Å: Chain A: Q.1020, N.1030, R.1041, A.1044, D.1075 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.1030, A:R.1041, A:R.1041, A:D.1075 NAG.6: 4 residues within 4Å: Chain A: N.1665, G.1666, N.1747, P.1805 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.1665, A:N.1747, A:N.1747 NAG.7: 2 residues within 4Å: Chain A: H.1764, N.1766 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.1766

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, R. et al., Marked structural rearrangement of mannose 6-phosphate/IGF2 receptor at different pH environments. Sci Adv (2020)

Release Date

2020-02-26

Peptides

Cation-independent mannose-6-phosphate receptor: A
Insulin-like growth factor II: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cation-independent mannose-6-phosphate receptor

Insulin-like growth factor II

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