SMTL ID : 6uoj.1

Crystal structure of cytosolic fumarate hydratase from Leishmania major in a complex with succinate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 14 residues within 4Å: Chain A: C.169, Q.170, D.171, G.250, G.252, S.253, A.287, C.288, C.382, A.384, R.386, K.527, G.551 Ligands: SIN.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions, Salt bridges: A:D.171 Metal complexes: A:C.169, A:C.288, A:C.382, H2O.1 SF4.3: 15 residues within 4Å: Chain B: C.169, Q.170, D.171, G.250, G.252, S.253, A.287, C.288, C.382, S.383, A.384, R.386, P.502, K.527 Ligands: SIN.4 4 PLIP interactions: 4 interactions with chain B, Salt bridges: B:D.171 Metal complexes: B:C.169, B:C.288, B:C.382

2 x SIN: SUCCINIC ACID(Non-covalent)

SIN.2: 12 residues within 4Å: Chain A: Q.170, D.171, R.209, G.252, R.457, T.503, T.504, R.507, K.527 Chain B: H.370, A.372 Ligands: SF4.1 11 PLIP interactions: 10 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:D.171, B:A.372 Hydrogen bonds: A:Q.170, A:G.252, A:T.503, A:T.504 Water bridges: A:G.487 Salt bridges: A:R.209, A:R.457, A:R.507, A:K.527 SIN.4: 12 residues within 4Å: Chain A: H.370, A.372 Chain B: Q.170, D.171, R.209, G.252, R.457, T.503, T.504, R.507, K.527 Ligands: SF4.3 11 PLIP interactions: 2 interactions with chain A, 9 interactions with chain B Hydrophobic interactions: A:A.372, B:D.171 Salt bridges: A:H.370, B:R.209, B:R.457, B:R.507, B:K.527 Hydrogen bonds: B:Q.170, B:D.171, B:T.504 Water bridges: B:G.487

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 6 residues within 4Å: Chain B: K.91, Y.92, V.93, E.94, N.107 Ligands: GOL.6 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.93, B:N.107 GOL.6: 9 residues within 4Å: Chain A: R.101 Chain B: K.105, V.106, N.107, P.108, W.186, T.187, G.188 Ligands: GOL.5 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.101, B:V.106, B:V.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feliciano, P.R. et al., Structural and Biochemical Investigations of the [4Fe-4S] Cluster-Containing Fumarate Hydratase fromLeishmania major. Biochemistry (2019)

Release Date

2019-12-04

Peptides

Fumarate hydratase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Fumarate hydratase 2

Related Entries With Identical Sequence