- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.34 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x LMR: (2S)-2-hydroxybutanedioic acid(Non-covalent)
LMR.2: 15 residues within 4Å:- Chain A: Q.170, D.171, R.209, G.250, G.251, G.252, P.502, T.503, T.504, R.507, K.527
- Chain B: H.370, A.372
- Ligands: SF4.1, GOL.6
11 PLIP interactions:10 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:Q.170, A:D.171, A:G.251, A:G.252, A:T.504, A:T.504
- Water bridges: A:G.487
- Salt bridges: A:R.209, A:R.507, A:K.527, B:H.370
LMR.9: 14 residues within 4Å:- Chain A: H.370, A.372
- Chain B: Q.170, D.171, R.209, G.250, G.251, G.252, P.502, T.503, T.504, R.507, K.527
- Ligands: SF4.8
13 PLIP interactions:12 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:D.171
- Hydrogen bonds: B:Q.170, B:D.171, B:G.251, B:G.252, B:T.503, B:T.504, B:T.504
- Water bridges: B:R.507
- Salt bridges: B:R.209, B:R.507, B:K.527, A:H.370
- 4 x MLA: MALONIC ACID(Non-covalent)
MLA.3: 9 residues within 4Å:- Chain A: I.176, L.178, Q.231, D.233, I.247, K.307, K.310, L.311
- Chain B: E.303
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:I.176
- Hydrogen bonds: A:Q.231, B:E.303
- Salt bridges: A:K.307, A:K.310
MLA.4: 11 residues within 4Å:- Chain A: P.76, H.77, H.78, F.83, K.180, E.243, F.244, Y.316, L.389, A.390, H.391
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:L.389
- Hydrogen bonds: A:E.243, A:E.243
- Water bridges: A:K.180, A:K.180
- Salt bridges: A:H.78, A:K.180, A:H.391
MLA.10: 9 residues within 4Å:- Chain A: E.303
- Chain B: I.176, L.178, Q.231, D.233, I.247, K.307, K.310, L.311
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:I.176
- Hydrogen bonds: B:Q.231, A:E.303
- Salt bridges: B:K.310
MLA.11: 11 residues within 4Å:- Chain B: P.76, H.77, H.78, F.83, K.180, E.243, F.244, Y.316, L.389, A.390, H.391
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:L.389
- Hydrogen bonds: B:E.243, B:E.243, B:E.243
- Water bridges: B:H.77, B:K.180
- Salt bridges: B:H.78, B:K.180, B:H.391
- 5 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 5 residues within 4Å:- Chain A: L.259, Y.260, Q.261
- Chain B: Y.258, Y.260
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:Y.258, A:Q.261, A:Q.261
GOL.6: 13 residues within 4Å:- Chain A: R.209, A.457, D.458, A.486, G.487, T.503, R.507, M.574, E.575
- Chain B: H.370, G.371, A.372
- Ligands: LMR.2
7 PLIP interactions:1 interactions with chain B, 6 interactions with chain A- Water bridges: B:A.372, A:D.458, A:A.486
- Hydrogen bonds: A:R.209, A:R.209, A:T.503, A:R.507
GOL.7: 8 residues within 4Å:- Chain A: N.255, K.256, Y.258, T.504, R.507
- Chain B: Q.261, T.263
- Ligands: GOL.12
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:K.256, A:Y.258
- Water bridges: B:Q.261
GOL.12: 7 residues within 4Å:- Chain A: Y.258, Y.260, T.282
- Chain B: L.259, Y.260, Q.261
- Ligands: GOL.7
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.261
- Water bridges: B:Q.261
GOL.13: 9 residues within 4Å:- Chain A: T.263, A.265
- Chain B: G.506, R.507, M.508, D.509, S.510, Y.511, Q.533
6 PLIP interactions:4 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:R.507, B:S.510, B:S.510, B:Q.533
- Water bridges: A:T.263, A:T.263
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Feliciano, P.R. et al., Structural and Biochemical Investigations of the [4Fe-4S] Cluster-Containing Fumarate Hydratase fromLeishmania major. Biochemistry (2019)
- Release Date
- 2019-12-04
- Peptides
- Fumarate hydratase 2: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.34 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x LMR: (2S)-2-hydroxybutanedioic acid(Non-covalent)
- 4 x MLA: MALONIC ACID(Non-covalent)
- 5 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Feliciano, P.R. et al., Structural and Biochemical Investigations of the [4Fe-4S] Cluster-Containing Fumarate Hydratase fromLeishmania major. Biochemistry (2019)
- Release Date
- 2019-12-04
- Peptides
- Fumarate hydratase 2: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B