- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x QFY: {N-(2-{bis[(pyridin-2-yl-kappaN)methyl]amino-kappaN}ethyl)-5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide}iron(3+)(Non-covalent)
QFY.1: 24 residues within 4Å:- Chain A: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, W.79, A.86, S.88, T.90, W.92, W.108, L.110, E.112, A.121, S.122, T.123, L.124, D.128
- Chain C: W.120
- Ligands: ACT.2, ACT.3
17 PLIP interactions:17 interactions with chain A,- Hydrophobic interactions: A:W.79, A:W.79, A:W.79, A:L.110, A:E.112, A:L.124, A:L.124
- Hydrogen bonds: A:N.23, A:S.27, A:Y.43, A:S.45, A:N.49, A:S.88, A:S.88, A:D.128
- Salt bridges: A:E.112
- Metal complexes: A:E.112
QFY.5: 24 residues within 4Å:- Chain B: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, W.79, A.86, S.88, T.90, W.92, W.108, L.110, E.112, A.121, S.122, T.123, L.124, D.128
- Chain D: W.120
- Ligands: ACT.6, ACT.7
16 PLIP interactions:16 interactions with chain B,- Hydrophobic interactions: B:W.79, B:W.79, B:W.79, B:L.110, B:E.112, B:L.124, B:L.124
- Hydrogen bonds: B:N.23, B:S.27, B:S.45, B:N.49, B:S.88, B:S.88, B:D.128
- Salt bridges: B:E.112
- Metal complexes: B:E.112
QFY.9: 24 residues within 4Å:- Chain A: W.120
- Chain C: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, W.79, A.86, S.88, T.90, W.92, W.108, L.110, E.112, A.121, S.122, T.123, L.124, D.128
- Ligands: ACT.10, ACT.11
17 PLIP interactions:17 interactions with chain C,- Hydrophobic interactions: C:W.79, C:W.79, C:W.79, C:L.110, C:E.112, C:L.124, C:L.124
- Hydrogen bonds: C:N.23, C:S.27, C:Y.43, C:S.45, C:N.49, C:S.88, C:S.88, C:D.128
- Salt bridges: C:E.112
- Metal complexes: C:E.112
QFY.13: 24 residues within 4Å:- Chain B: W.120
- Chain D: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, W.79, A.86, S.88, T.90, W.92, W.108, L.110, E.112, A.121, S.122, T.123, L.124, D.128
- Ligands: ACT.14, ACT.15
16 PLIP interactions:16 interactions with chain D,- Hydrophobic interactions: D:W.79, D:W.79, D:W.79, D:L.110, D:E.112, D:L.124, D:L.124
- Hydrogen bonds: D:N.23, D:S.27, D:S.45, D:N.49, D:S.88, D:S.88, D:D.128
- Salt bridges: D:E.112
- Metal complexes: D:E.112
- 12 x ACT: ACETATE ION(Non-functional Binders)
ACT.2: 5 residues within 4Å:- Chain A: N.49, A.86, E.112
- Ligands: QFY.1, ACT.3
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.49
ACT.3: 3 residues within 4Å:- Chain A: E.112
- Ligands: QFY.1, ACT.2
No protein-ligand interaction detected (PLIP)ACT.4: 1 residues within 4Å:- Chain A: R.84
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.84
ACT.6: 5 residues within 4Å:- Chain B: N.49, A.86, E.112
- Ligands: QFY.5, ACT.7
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.49
ACT.7: 3 residues within 4Å:- Chain B: E.112
- Ligands: QFY.5, ACT.6
No protein-ligand interaction detected (PLIP)ACT.8: 1 residues within 4Å:- Chain B: R.84
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:R.84
ACT.10: 5 residues within 4Å:- Chain C: N.49, A.86, E.112
- Ligands: QFY.9, ACT.11
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.49
ACT.11: 3 residues within 4Å:- Chain C: E.112
- Ligands: QFY.9, ACT.10
No protein-ligand interaction detected (PLIP)ACT.12: 1 residues within 4Å:- Chain C: R.84
1 PLIP interactions:1 interactions with chain C- Salt bridges: C:R.84
ACT.14: 5 residues within 4Å:- Chain D: N.49, A.86, E.112
- Ligands: QFY.13, ACT.15
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:N.49
ACT.15: 3 residues within 4Å:- Chain D: E.112
- Ligands: QFY.13, ACT.14
No protein-ligand interaction detected (PLIP)ACT.16: 1 residues within 4Å:- Chain D: R.84
1 PLIP interactions:1 interactions with chain D- Salt bridges: D:R.84
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Miller, K.R. et al., Artificial Iron Proteins: Modeling the Active Sites in Non-Heme Dioxygenases. Inorg.Chem. (2020)
- Release Date
- 2020-05-06
- Peptides
- Streptavidin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x QFY: {N-(2-{bis[(pyridin-2-yl-kappaN)methyl]amino-kappaN}ethyl)-5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide}iron(3+)(Non-covalent)
- 12 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Miller, K.R. et al., Artificial Iron Proteins: Modeling the Active Sites in Non-Heme Dioxygenases. Inorg.Chem. (2020)
- Release Date
- 2020-05-06
- Peptides
- Streptavidin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A