SMTL ID : 6uv6.1 (2 other biounits)

AtmM with bound rebeccamycin analogue

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.72 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 26 residues within 4Å: Chain A: Y.8, N.22, I.23, H.24, D.62, V.63, G.64, C.65, G.66, G.68, P.70, V.85, S.86, I.87, S.88, Q.91, A.113, D.114, A.115, M.116, W.129, M.131, E.132, S.133, H.136, M.137 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:I.23, A:G.64, A:G.64, A:G.66, A:S.86, A:S.86, A:I.87, A:Q.91, A:D.114, A:D.114, A:A.115 Water bridges: A:C.65 Salt bridges: A:H.24

1 x BY9: 12-beta-D-glucopyranosyl-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione(Non-covalent)

BY9.2: 22 residues within 4Å: Chain A: M.7, Y.8, L.11, S.12, F.15, I.23, H.24, L.25, E.132, H.135, H.136, F.162, F.179, G.182, G.183, V.185, M.219, T.222, L.245, N.248, F.249, A.252 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:Y.8, A:L.11, A:I.23, A:F.179, A:L.245, A:N.248, A:F.249, A:A.252 Hydrogen bonds: A:Y.8, A:I.23, A:E.132, A:G.183, A:N.248 pi-Stacking: A:F.15, A:F.15, A:F.249, A:F.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alvarado, S.K. et al., Structure of AtmM Bound with Glycosylated Indolocarbazole. To Be Published

Release Date

2020-11-25

Peptides

D-glucose O-methyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D-glucose O-methyltransferase

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