SMTL ID : 6uvq.3 (3 other biounits)

Crystal structure of Apo AtmM

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

homo-tetramer

Ligands

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 8 residues within 4Å: Chain A: L.18, G.64, S.86, I.87, Q.91, S.133, H.136 Chain D: R.117 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain D Hydrogen bonds: A:S.86, A:I.87, A:Q.91 Water bridges: A:Q.91, D:R.117 Salt bridges: D:R.117 ACT.3: 9 residues within 4Å: Chain B: L.18, G.64, S.86, I.87, Q.91, S.133, H.136, M.137 Chain C: R.117 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:H.136 Hydrogen bonds: B:I.87, B:Q.91 Water bridges: C:R.117 Salt bridges: C:R.117 ACT.5: 8 residues within 4Å: Chain B: R.117 Chain C: L.18, G.64, S.86, I.87, Q.91, S.133, H.136 6 PLIP interactions: 4 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:S.86, C:I.87, C:Q.91 Water bridges: C:Q.91, B:R.117 Salt bridges: B:R.117 ACT.7: 9 residues within 4Å: Chain A: R.117 Chain D: L.18, G.64, S.86, I.87, Q.91, S.133, H.136, M.137 5 PLIP interactions: 3 interactions with chain D, 2 interactions with chain A Hydrophobic interactions: D:H.136 Hydrogen bonds: D:I.87, D:Q.91 Water bridges: A:R.117 Salt bridges: A:R.117

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: N.22, E.132, H.136 No protein-ligand interaction detected (PLIP) MG.4: 3 residues within 4Å: Chain B: N.22, E.132, H.136 No protein-ligand interaction detected (PLIP) MG.6: 3 residues within 4Å: Chain C: N.22, E.132, H.136 No protein-ligand interaction detected (PLIP) MG.8: 3 residues within 4Å: Chain D: N.22, E.132, H.136 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alvarado, S.K. et al., Structure of Apo AtmM. To Be Published

Release Date

2020-11-25

Peptides

D-glucose O-methyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

D-glucose O-methyltransferase

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