SMTL ID : 6v5m.1

Crystal Structure of Metallo Beta Lactamase from Hirschia baltica in Complex with Succinate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: D.94, C.173, H.215 Ligands: ZN.2, SIN.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.94, A:C.173, A:H.215, H2O.4 ZN.2: 6 residues within 4Å: Chain A: H.90, H.92, D.94, H.154 Ligands: ZN.1, SIN.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.90, A:H.92, A:H.154, H2O.4

2 x SIN: SUCCINIC ACID(Non-covalent)

SIN.3: 9 residues within 4Å: Chain A: I.43, H.154, C.173, R.176, G.184, N.185, H.215 Ligands: ZN.1, ZN.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:N.185 Hydrogen bonds: A:N.185 Water bridges: A:R.176, A:R.176, A:R.176, A:R.176, A:R.176 Salt bridges: A:H.154, A:R.176, A:R.176, A:H.215, A:H.215 SIN.4: 4 residues within 4Å: Chain A: V.14, K.17, G.41, N.42 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.42, A:N.42 Salt bridges: A:K.17

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 8 residues within 4Å: Chain A: T.112, L.114, T.115, I.133, S.134, Y.149, D.157, I.159 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.112, A:S.134, A:D.157 EDO.9: 5 residues within 4Å: Chain A: V.37, W.40, G.41, N.42, I.43 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.41

3 x FMT: FORMIC ACID(Non-functional Binders)

FMT.6: 5 residues within 4Å: Chain A: N.132, I.133, S.134, E.135, S.138 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.134, A:E.135, A:S.138 FMT.7: 6 residues within 4Å: Chain A: T.26, G.27, I.50, E.51, V.165, N.166 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.51, A:E.163, A:N.166 FMT.8: 4 residues within 4Å: Chain A: P.177, G.178, G.216, K.217 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.217, A:K.217 Water bridges: A:G.178, A:G.178

1 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.10: 3 residues within 4Å: Chain A: Y.55, R.84, E.143 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.84 Salt bridges: A:E.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maltseva, N. et al., Crystal Structure of Metallo Beta Lactamase from Hirschia baltica in Complex with Succinate. To Be Published

Release Date

2019-12-25

Peptides

Beta-lactamase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase

Related Entries With Identical Sequence