SMTL ID : 6v9a.2 (4 other biounits)

Agrobacterium tumefaciens ADP-Glucose pyrophosphorylase-S72D

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

4 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 6 residues within 4Å: Chain A: H.333, S.354, N.370, S.371, R.388 Chain B: V.306 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.354, A:S.371, A:R.388, A:R.388 Salt bridges: A:H.333, A:R.338, A:R.388 CIT.4: 5 residues within 4Å: Chain B: H.333, S.354, N.370, S.371, R.388 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:S.354, B:S.371, B:R.388, B:R.388 Water bridges: B:H.333, B:R.338, B:S.371, B:R.388 Salt bridges: B:H.333, B:R.388 CIT.5: 6 residues within 4Å: Chain C: H.333, R.338, S.354, N.370, S.371, R.388 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:S.354, C:S.354, C:N.370, C:S.371, C:R.388, C:R.388 Water bridges: C:R.388 Salt bridges: C:H.333, C:R.338, C:R.388 CIT.7: 6 residues within 4Å: Chain D: H.333, R.338, S.354, N.370, S.371, R.388 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:S.354, D:S.371, D:R.388, D:R.388 Salt bridges: D:H.333, D:R.338, D:R.388

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: F.281, V.306, P.308, D.311, I.312, Y.313 Chain B: K.330, I.352 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.311, A:I.312 GOL.3: 4 residues within 4Å: Chain A: I.352 Chain B: F.281, D.311, Y.313 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.311, B:D.311 Water bridges: B:V.306, B:I.312 GOL.6: 6 residues within 4Å: Chain C: F.281, P.308, D.311, Y.313 Chain D: K.330, I.352 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:D.311, C:D.311 Water bridges: C:I.312 GOL.8: 5 residues within 4Å: Chain C: K.330 Chain D: F.281, P.308, D.311, Y.313 1 PLIP interactions: 1 interactions with chain D Water bridges: D:I.312

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alghamdi, M.A. et al., Site-directed mutagenesis of Serine-72 reveals the location of the fructose 6-phosphate regulatory site of the Agrobacterium tumefaciens ADP-glucose pyrophosphorylase. Protein Sci. (2022)

Release Date

2020-12-16

Peptides

Glucose-1-phosphate adenylyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Glucose-1-phosphate adenylyltransferase

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