SMTL ID : 6vgw.1

Crystal structure of VidaL intein (selenomethionine variant)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.51 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: E.1, S.2, K.59, N.79 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.1, A:S.2, A:S.2, A:N.79 Water bridges: A:K.59 Salt bridges: A:K.59

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: D.96, V.113 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.96 Water bridges: A:D.96 GOL.3: 3 residues within 4Å: Chain A: V.97, L.112, V.113 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.113 GOL.4: 6 residues within 4Å: Chain A: Y.35, Y.40, T.41, I.42, T.52, I.53 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.35, A:I.42, A:I.42, A:I.53 Water bridges: A:G.38 GOL.5: 6 residues within 4Å: Chain A: W.89, P.129, N.130, H.131, H.141, K.145 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.130 Water bridges: A:W.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Burton, A.J. et al., Live-cell protein engineering with an ultra-short split intein. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-05-27

Peptides

VidaL: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

VidaL

Related Entries With Identical Sequence