SMTL ID : 6vgz.1

2.25 A resolution structure of MERS 3CL protease in complex with inhibitor 6d

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

2 x QZG: N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-N~2~-({[trans-4-(propan-2-yl)cyclohexyl]oxy}carbonyl)-L-leucinamide(Covalent)

QZG.1: 17 residues within 4Å: Chain A: H.48, Y.61, F.150, L.151, C.152, G.153, S.154, C.155, H.173, Q.174, M.175, E.176, A.178, H.182, D.197, K.198, Q.199 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:H.48 Hydrogen bonds: A:G.153, A:C.155, A:Q.174, A:E.176, A:E.176, A:E.176, A:Q.199 QZG.2: 13 residues within 4Å: Chain B: F.150, L.151, G.153, S.154, C.155, H.173, Q.174, M.175, E.176, H.182, D.197, K.198, Q.199 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:M.175 Hydrogen bonds: B:G.153, B:S.154, B:C.155, B:Q.174, B:E.176, B:Q.199, B:Q.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rathnayake, A.D. et al., 3C-like protease inhibitors block coronavirus replication in vitro and improve survival in MERS-CoV-infected mice. Sci Transl Med (2020)

Release Date

2020-08-12

Peptides

Orf1a protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Orf1a protein

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