SMTL ID : 8e6d.1

Crystal structure of MERS 3CL protease in complex with a p-fluorophenyl dimethyl sulfane inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x UTL: (1R,2S)-2-{[N-({2-[(4-fluorophenyl)sulfanyl]-2-methylpropoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid(Covalent)

UTL.1: 16 residues within 4Å: Chain A: H.48, F.150, L.151, C.152, S.154, C.155, H.173, Q.174, M.175, E.176, H.182, D.197, K.198, Q.199, V.200, H.201 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:H.48, A:M.175, A:H.201 Hydrogen bonds: A:C.155, A:Q.174, A:E.176, A:E.176, A:E.176, A:Q.199 UTL.2: 16 residues within 4Å: Chain B: H.48, F.150, L.151, C.152, S.154, C.155, H.173, Q.174, M.175, E.176, H.182, D.197, K.198, Q.199, V.200, H.201 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:H.48, B:M.175, B:H.201 Hydrogen bonds: B:C.155, B:Q.174, B:E.176, B:E.176, B:Q.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dampalla, C.S. et al., Structure-guided design of direct-acting antivirals that exploit the gem-dimethyl effect and potently inhibit 3CL proteases of severe acute respiratory syndrome Coronavirus-2 (SARS-CoV-2) and middle east respiratory syndrome coronavirus (MERS-CoV). Eur.J.Med.Chem. (2023)

Release Date

2022-09-07

Peptides

Orf1a protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Orf1a protein

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