SMTL ID : 6vip.1 (1 other biounit)

TUDOR DOMAIN OF TUMOR SUPPRESSOR P53BP1 WITH MFP-6008

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.36 Å

Oligo State

monomer

Ligands

1 x QXY: {4-[(3,5-dimethyl-1H-pyrazol-1-yl)methyl]phenyl}(4-ethylpiperazin-1-yl)methanone(Non-covalent)

QXY.1: 9 residues within 4Å: Chain A: W.14, N.17, Y.19, Y.21, F.38, D.40, Y.42, F.72, I.106 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:W.14, A:W.14, A:N.17, A:Y.19, A:Y.19, A:Y.21, A:F.38, A:F.72, A:I.106 Hydrogen bonds: A:N.17 Water bridges: A:Y.21 Salt bridges: A:D.40 pi-Cation interactions: A:W.14, A:W.14

2 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 3 residues within 4Å: Chain A: P.58, L.59, H.80 No protein-ligand interaction detected (PLIP) UNX.3: 3 residues within 4Å: Chain A: E.86, L.87, R.102 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

The, J. et al., TUDOR DOMAIN OF TUMOR SUPPRESSOR P53BP1 WITH MFP-6008. to be published

Release Date

2020-02-12

Peptides

TP53-binding protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

TP53-binding protein 1

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