SMTL ID : 8eom.1

TUDOR DOMAIN OF TUMOR SUPPRESSOR P53BP1 WITH MFP-5973

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x WNQ: 4-(4-methylpiperazine-1-sulfonyl)benzamide(Non-covalent)

WNQ.1: 13 residues within 4Å: Chain A: W.14, Y.21, F.38, D.40, Y.42 Chain B: Y.21, D.40, L.66, S.67, E.68, Y.71 Ligands: UNX.2, WNQ.5 7 PLIP interactions: 3 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:L.66 Hydrogen bonds: B:D.40, B:D.40 Salt bridges: A:D.40, A:D.40 pi-Cation interactions: A:W.14, A:W.14 WNQ.5: 13 residues within 4Å: Chain A: Y.21, D.40, L.66, S.67, E.68, Y.71 Chain B: W.14, Y.21, F.38, D.40, Y.42 Ligands: WNQ.1, UNX.2 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Salt bridges: B:D.40, B:D.40 pi-Cation interactions: B:W.14, B:W.14 Hydrophobic interactions: A:L.66 Hydrogen bonds: A:D.40

3 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 6 residues within 4Å: Chain A: Y.71, F.72 Chain B: Y.71, F.72 Ligands: WNQ.1, WNQ.5 No protein-ligand interaction detected (PLIP) UNX.3: 2 residues within 4Å: Chain A: Y.71 Chain B: Y.71 No protein-ligand interaction detected (PLIP) UNX.4: 2 residues within 4Å: Chain A: S.84, G.85 No protein-ligand interaction detected (PLIP)

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 4 residues within 4Å: Chain B: R.9, E.86, L.87, R.102 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:L.87 Water bridges: B:R.9, B:R.9, B:R.102 Salt bridges: B:R.9, B:R.102 SO4.7: 2 residues within 4Å: Chain B: S.73, A.74 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

The, J. et al., TUDOR DOMAIN OF TUMOR SUPPRESSOR P53BP1 WITH MFP-5973. to be published

Release Date

2023-01-18

Peptides

TP53-binding protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

TP53-binding protein 1

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