SMTL ID : 6vje.1

Crystal structure of Pseudomonas aeruginosa penicillin-binding protein 3 (PBP3) complexed with ceftobiprole

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

monomer

Ligands

1 x RB6: (2R)-2-[(1R)-1-{[(2Z)-2-(5-amino-1,2,4-thiadiazol-3-yl)-2-(hydroxyimino)acetyl]amino}-2-oxoethyl]-5-({2-oxo-1-[(3R)-pyr rolidin-3-yl]-2,5-dihydro-1H-pyrrol-3-yl}methyl)-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid(Covalent)

RB6.1: 19 residues within 4Å: Chain A: E.250, G.252, S.253, V.292, S.308, N.310, G.367, Y.368, S.444, G.445, T.446, A.447, R.448, Y.462, K.488, A.489, G.490, Y.491, F.492 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:V.292, A:T.446, A:Y.462, A:F.492 Hydrogen bonds: A:E.250, A:E.250, A:S.253, A:S.308, A:S.308, A:N.310, A:T.446, A:T.446, A:T.446, A:R.448, A:A.489, A:F.492 Water bridges: A:S.444 Salt bridges: A:K.443

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 6 residues within 4Å: Chain A: S.464, G.494, L.495, V.496, S.497, A.498 Ligand excluded by PLIP CL.3: 1 residues within 4Å: Chain A: R.294 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, V. et al., Structural Insights into Ceftobiprole Inhibition of Pseudomonas aeruginosa Penicillin-Binding Protein 3. Antimicrob.Agents Chemother. (2020)

Release Date

2020-03-11

Peptides

Peptidoglycan D,D-transpeptidase FtsI: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidoglycan D,D-transpeptidase FtsI

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