SMTL ID : 6vkx.1 (2 other biounits)

Crystal structure of the carbohydrate-binding domain VP8* of human P[8] rotavirus strain BM13851

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

monomer

Ligands

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.1: 5 residues within 4Å: Chain A: E.31, F.59, G.60, S.134, T.136 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.134, A:T.136, A:T.136

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 4 residues within 4Å: Chain A: D.37, N.126, T.127, A.128 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, S. et al., Structural basis of P[II] rotavirus evolution and host ranges under selection of histo-blood group antigens. Proc.Natl.Acad.Sci.USA (2021)

Release Date

2021-01-27

Peptides

Outer capsid protein VP4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Outer capsid protein VP4

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