SMTL ID : 7jhz.3 (2 other biounits)

Crystal structure of the carbohydrate-binding domain VP8* of human P[8] rotavirus strain BM13851 in complex with LNDFH I

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.68 Å

Oligo State

monomer

Ligands

1 x BGC- GAL- NAG- GAL- FUC- FUC: alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-3)-[alpha-L-fucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose

BGC-GAL-NAG-GAL-FUC-FUC.1: 10 residues within 4Å: Chain A: Y.89, R.91, R.92, T.93, H.114, G.115, R.119, T.121, D.123, S.124 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.89, A:R.91, A:R.92, A:D.123, A:T.93, A:T.93 Salt bridges: A:R.91

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: E.31, T.33, S.134, I.135, T.136 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, S. et al., Structural basis of P[II] rotavirus evolution and host ranges under selection of histo-blood group antigens. Proc.Natl.Acad.Sci.USA (2021)

Release Date

2021-07-28

Peptides

Outer capsid protein VP4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Outer capsid protein VP4

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