SMTL ID : 6vlf.1

Crystal structure of mouse alpha 1,6-fucosyltransferase, FUT8 in its Apo-form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.333, S.437, Q.438, V.439 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.438, A:V.439 Water bridges: A:G.187, A:G.189 Salt bridges: A:R.333 SO4.2: 4 residues within 4Å: Chain A: L.265, H.266, P.267, R.268 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.265, A:R.268 Salt bridges: A:H.266 SO4.9: 4 residues within 4Å: Chain B: R.333, S.437, Q.438, V.439 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.438, B:V.439 Salt bridges: B:R.333 SO4.10: 4 residues within 4Å: Chain B: L.265, H.266, P.267, R.268 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.268 Salt bridges: B:H.266

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: V.179, N.181, R.237, E.258, L.259 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.181, A:L.259 Water bridges: A:N.181, A:R.237 EDO.4: 2 residues within 4Å: Chain A: H.126, Q.359 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.359 EDO.5: 4 residues within 4Å: Chain A: Y.165, L.166, P.169, T.208 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.166 Water bridges: A:T.208 EDO.6: 2 residues within 4Å: Chain A: G.243, H.244 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.244, A:H.244, A:H.244 Water bridges: A:T.242 EDO.7: 4 residues within 4Å: Chain A: Q.438, R.441, Y.466, G.468 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.436, A:Q.438, A:R.441, A:R.441 EDO.8: 5 residues within 4Å: Chain A: F.97, D.123, H.127 Chain B: P.522, Y.524 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.127 EDO.11: 5 residues within 4Å: Chain B: G.498, V.499, A.500, I.511, T.518 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.499 Water bridges: B:R.513 EDO.12: 4 residues within 4Å: Chain B: K.301, I.304, T.449, L.450 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.301, B:K.301 EDO.13: 5 residues within 4Å: Chain A: R.286 Chain B: G.77, K.78, D.79, D.142 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:K.78, B:D.79, B:D.142, A:R.286, A:R.286

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jarva, M.A. et al., Structural basis of substrate recognition and catalysis by fucosyltransferase 8. J.Biol.Chem. (2020)

Release Date

2020-02-26

Peptides

Alpha-(1,6)-fucosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Alpha-(1,6)-fucosyltransferase

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