SMTL ID : 6vmd.1

Chloroplast ATP synthase (C1, CF1)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-1-1-1-mer

Ligands

4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 18 residues within 4Å: Chain A: D.171, R.172, Q.173, T.174, G.175, K.176, T.177, A.178, Q.201, F.350, R.355, P.356, Q.425 Chain D: S.372, T.373, L.375, Q.376, Y.385 15 PLIP interactions: 2 interactions with chain D, 13 interactions with chain A Hydrogen bonds: D:S.372, D:Q.376, A:Q.173, A:T.174, A:K.176, A:T.177, A:T.177, A:T.177, A:A.178, A:Q.201, A:Q.201, A:Q.201 Salt bridges: A:K.176, A:K.176 pi-Stacking: A:F.350 ATP.2: 15 residues within 4Å: Chain B: Q.173, T.174, G.175, K.176, T.177, A.178, F.350, R.355, P.356, Q.423, P.424, Q.425 Chain E: T.373, Q.376, R.378 16 PLIP interactions: 13 interactions with chain B, 3 interactions with chain E Hydrogen bonds: B:Q.173, B:T.174, B:G.175, B:G.175, B:T.177, B:T.177, B:A.178, B:Q.423, B:Q.425, E:Q.376, E:R.378, E:R.378 Salt bridges: B:K.176, B:K.176 pi-Stacking: B:F.350 pi-Cation interactions: B:R.355 ATP.3: 15 residues within 4Å: Chain C: Q.173, T.174, G.175, K.176, T.177, A.178, Q.201, F.350, R.355, Q.423, P.424, Q.425 Chain F: S.372, T.373, Y.385 18 PLIP interactions: 16 interactions with chain C, 2 interactions with chain F Hydrogen bonds: C:Q.173, C:Q.173, C:T.174, C:G.175, C:K.176, C:T.177, C:T.177, C:T.177, C:A.178, C:Q.423, C:Q.423, C:Q.425, F:S.372, F:Y.385 Salt bridges: C:K.176, C:K.176 pi-Stacking: C:F.350 pi-Cation interactions: C:R.355 ATP.4: 16 residues within 4Å: Chain B: V.364, S.365, R.366 Chain D: A.174, G.175, V.176, G.177, K.178, T.179, V.180, E.204, R.205, Y.362, P.363, F.435, F.441 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:G.175, D:V.176, D:G.177, D:K.178, D:T.179, D:T.179, D:T.179, D:V.180, D:R.205 Salt bridges: D:R.205 pi-Stacking: D:Y.362, D:Y.362

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.5: 17 residues within 4Å: Chain A: V.364, S.365, R.366 Chain F: G.173, A.174, G.175, V.176, G.177, K.178, T.179, V.180, R.205, Y.362, P.363, F.435, A.438, F.441 13 PLIP interactions: 10 interactions with chain F, 3 interactions with chain A Hydrogen bonds: F:G.173, F:G.175, F:V.176, F:G.177, F:T.179, A:S.365 Salt bridges: F:K.178, F:R.205, F:R.205, A:R.366, A:R.366 pi-Stacking: F:Y.362, F:Y.362

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, J.H. et al., Structural basis of redox modulation on chloroplast ATP synthase. Commun Biol (2020)

Release Date

2020-09-09

Peptides

ATP synthase subunit alpha, chloroplastic: ABC
ATP synthase subunit beta, chloroplastic: DEF
ATP synthase delta chain, chloroplastic: G
ATP synthase epsilon chain, chloroplastic: H
ATP synthase gamma chain, chloroplastic: I

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
d

H
e

I
g

ATP synthase subunit alpha, chloroplastic

ATP synthase subunit beta, chloroplastic

ATP synthase delta chain, chloroplastic

ATP synthase epsilon chain, chloroplastic

ATP synthase gamma chain, chloroplastic

Related Entries With Identical Sequence