SMTL ID : 6voi.1

Chloroplast ATP synthase (O1, CF1)

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-1-1-1-mer

Ligands

4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 17 residues within 4Å: Chain A: D.171, R.172, Q.173, T.174, G.175, K.176, T.177, A.178, F.350, R.355, P.356, Q.425 Chain D: S.372, T.373, L.375, Q.376, Y.385 17 PLIP interactions: 14 interactions with chain A, 3 interactions with chain D Hydrogen bonds: A:Q.173, A:T.174, A:G.175, A:K.176, A:T.177, A:T.177, A:T.177, A:A.178, A:R.355, A:Q.423, A:Q.425, A:Q.425, D:S.372, D:L.375, D:Q.376 Salt bridges: A:K.176, A:K.176 ATP.2: 16 residues within 4Å: Chain B: Q.173, T.174, G.175, K.176, T.177, A.178, Q.201, D.262, F.350, R.355, Q.423, P.424, Q.425 Chain F: S.372, T.373, Y.385 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:Q.173, B:Q.173, B:T.174, B:G.175, B:T.177, B:T.177, B:T.177, B:A.178, B:Q.201, B:D.262, B:D.263, B:Q.423 Salt bridges: B:K.176, B:K.176, B:K.176 ATP.3: 16 residues within 4Å: Chain C: Q.173, T.174, G.175, K.176, T.177, A.178, Q.201, D.263, E.321, R.355, P.424, Q.425 Chain E: T.373, Q.376, R.378, I.379 15 PLIP interactions: 12 interactions with chain C, 3 interactions with chain E Hydrogen bonds: C:Q.173, C:G.175, C:G.175, C:T.177, C:T.177, C:A.178, C:Q.201, C:Q.201, C:P.424, E:Q.376, E:R.378, E:R.378 Salt bridges: C:K.176, C:K.176 pi-Stacking: C:F.350 ATP.4: 19 residues within 4Å: Chain C: S.337, V.364, R.366 Chain D: G.173, A.174, G.175, V.176, G.177, K.178, T.179, V.180, E.204, R.205, M.239, D.273, N.274, Y.362, A.438, F.441 17 PLIP interactions: 17 interactions with chain D Hydrogen bonds: D:G.175, D:V.176, D:G.177, D:K.178, D:T.179, D:V.180, D:E.204, D:D.273, D:N.274 Salt bridges: D:K.178, D:K.178, D:K.178, D:R.205, D:R.205, D:R.205 pi-Stacking: D:Y.362, D:Y.362

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.5: 17 residues within 4Å: Chain A: S.365, R.366, L.385 Chain F: G.175, V.176, G.177, K.178, T.179, V.180, E.204, E.208, Y.362, Q.433, F.435, A.438, F.441, T.442 10 PLIP interactions: 7 interactions with chain F, 3 interactions with chain A Hydrogen bonds: F:G.175, F:T.179, F:E.204, F:E.208, F:Q.433, A:S.365 pi-Stacking: F:Y.362, F:Y.362 Salt bridges: A:R.366, A:R.366

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, J.H. et al., Structural basis of redox modulation on chloroplast ATP synthase. Commun Biol (2020)

Release Date

2020-09-09

Peptides

ATP synthase subunit alpha, chloroplastic: ABC
ATP synthase subunit beta, chloroplastic: DEF
ATP synthase delta chain, chloroplastic: G
ATP synthase gamma chain, chloroplastic: H
ATP synthase epsilon chain, chloroplastic: I

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

D
D

E
E

F
F

G
d

H
g

I
e

ATP synthase subunit alpha, chloroplastic

ATP synthase subunit beta, chloroplastic

ATP synthase delta chain, chloroplastic

ATP synthase gamma chain, chloroplastic

ATP synthase epsilon chain, chloroplastic

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