SMTL ID : 6vpq.5 (5 other biounits)

Crystal structure of the C-terminal domain of DENR

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

monomer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: D.187, I.190 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.187, A:I.190, H2O.3 MG.2: 2 residues within 4Å: Chain A: D.176, Q.179 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.176 MG.3: 1 residues within 4Å: Chain A: E.195 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.195, H2O.2

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.4: 4 residues within 4Å: Chain A: C.132, G.133, T.136, D.162 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.162 Water bridges: A:D.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lomakin, I.B. et al., Crystal structure of the C-terminal domain of DENR. Comput Struct Biotechnol J (2020)

Release Date

2020-04-08

Peptides

Density-regulated protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

Density-regulated protein

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