SMTL ID : 6vra.1

Anthrax octamer prechannel bound to full-length edema factor

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-4-mer

Ligands

16 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.177, D.179, D.181, I.183, E.188 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.177, A:D.179, A:D.181, A:I.183, A:E.188 CA.2: 6 residues within 4Å: Chain A: D.179, D.181, E.188, S.222, K.225, D.235 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.179, A:E.188, A:S.222, A:K.225, A:D.235 CA.3: 6 residues within 4Å: Chain B: D.177, D.179, D.181, I.183, D.185, E.188 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.177, B:D.179, B:D.181, B:I.183, B:E.188 CA.4: 6 residues within 4Å: Chain B: D.179, D.181, E.188, S.222, K.225, D.235 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.179, B:E.188, B:S.222, B:K.225, B:D.235 CA.5: 5 residues within 4Å: Chain C: D.177, D.179, D.181, I.183, E.188 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:D.177, C:D.179, C:D.181, C:I.183, C:E.188 CA.6: 6 residues within 4Å: Chain C: D.179, D.181, E.188, S.222, K.225, D.235 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:D.179, C:E.188, C:S.222, C:K.225, C:D.235 CA.7: 6 residues within 4Å: Chain D: D.177, D.179, D.181, I.183, D.185, E.188 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:D.177, D:D.179, D:D.181, D:I.183, D:E.188 CA.8: 6 residues within 4Å: Chain D: D.179, D.181, E.188, S.222, K.225, D.235 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:D.179, D:E.188, D:S.222, D:K.225, D:D.235 CA.9: 5 residues within 4Å: Chain E: D.177, D.179, D.181, I.183, E.188 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:D.177, E:D.179, E:D.181, E:I.183, E:E.188 CA.10: 6 residues within 4Å: Chain E: D.179, D.181, E.188, S.222, K.225, D.235 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:D.179, E:E.188, E:S.222, E:K.225, E:D.235 CA.11: 6 residues within 4Å: Chain F: D.177, D.179, D.181, I.183, D.185, E.188 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:D.177, F:D.179, F:D.181, F:I.183, F:E.188 CA.12: 6 residues within 4Å: Chain F: D.179, D.181, E.188, S.222, K.225, D.235 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:D.179, F:E.188, F:S.222, F:K.225, F:D.235 CA.13: 5 residues within 4Å: Chain G: D.177, D.179, D.181, I.183, E.188 5 PLIP interactions: 5 interactions with chain G Metal complexes: G:D.177, G:D.179, G:D.181, G:I.183, G:E.188 CA.14: 6 residues within 4Å: Chain G: D.179, D.181, E.188, S.222, K.225, D.235 5 PLIP interactions: 5 interactions with chain G Metal complexes: G:D.179, G:E.188, G:S.222, G:K.225, G:D.235 CA.15: 6 residues within 4Å: Chain H: D.177, D.179, D.181, I.183, D.185, E.188 5 PLIP interactions: 5 interactions with chain H Metal complexes: H:D.177, H:D.179, H:D.181, H:I.183, H:E.188 CA.16: 6 residues within 4Å: Chain H: D.179, D.181, E.188, S.222, K.225, D.235 5 PLIP interactions: 5 interactions with chain H Metal complexes: H:D.179, H:E.188, H:S.222, H:K.225, H:D.235

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, K. et al., Atomic Structures of Anthrax Prechannel Bound with Full-Length Lethal and Edema Factors. Structure (2020)

Release Date

2020-12-16

Peptides

Protective antigen: ACEG
Protective antigen: BDFH
Calmodulin-sensitive adenylate cyclase: IJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

G
G

B
B

D
D

F
F

H
H

I
I

J
J

K
K

L
L

Protective antigen

Protective antigen

Calmodulin-sensitive adenylate cyclase

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