SMTL ID : 6wjj.1

Anthrax octamer prechannel bound to full-length lethal factor

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-4-mer

Ligands

16 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.177, D.179, D.181, I.183, E.188 Ligands: CA.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.179, A:D.179, A:D.181, A:I.183, A:E.188 CA.2: 8 residues within 4Å: Chain A: D.179, D.181, E.188, S.221, S.222, K.225, D.235 Ligands: CA.1 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.179, A:D.181, A:E.188, A:S.222, A:D.235 CA.3: 6 residues within 4Å: Chain B: D.177, D.179, D.181, I.183, E.188 Ligands: CA.4 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.179, B:D.179, B:D.181, B:I.183, B:E.188 CA.4: 8 residues within 4Å: Chain B: D.179, D.181, E.188, S.221, S.222, K.225, D.235 Ligands: CA.3 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.179, B:D.181, B:E.188, B:E.188, B:S.222 CA.7: 6 residues within 4Å: Chain D: D.177, D.179, D.181, I.183, E.188 Ligands: CA.8 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:D.179, D:D.179, D:D.181, D:I.183, D:E.188 CA.8: 8 residues within 4Å: Chain D: D.179, D.181, E.188, S.221, S.222, K.225, D.235 Ligands: CA.7 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:D.179, D:D.181, D:E.188, D:S.222, D:D.235 CA.9: 6 residues within 4Å: Chain E: D.177, D.179, D.181, I.183, E.188 Ligands: CA.10 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:D.179, E:D.179, E:D.181, E:I.183, E:E.188 CA.10: 8 residues within 4Å: Chain E: D.179, D.181, E.188, S.221, S.222, K.225, D.235 Ligands: CA.9 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:D.179, E:D.181, E:E.188, E:E.188, E:S.222 CA.13: 6 residues within 4Å: Chain G: D.177, D.179, D.181, I.183, E.188 Ligands: CA.14 5 PLIP interactions: 5 interactions with chain G Metal complexes: G:D.179, G:D.179, G:D.181, G:I.183, G:E.188 CA.14: 8 residues within 4Å: Chain G: D.179, D.181, E.188, S.221, S.222, K.225, D.235 Ligands: CA.13 5 PLIP interactions: 5 interactions with chain G Metal complexes: G:D.179, G:D.181, G:E.188, G:S.222, G:D.235 CA.15: 6 residues within 4Å: Chain H: D.177, D.179, D.181, I.183, E.188 Ligands: CA.16 5 PLIP interactions: 5 interactions with chain H Metal complexes: H:D.179, H:D.179, H:D.181, H:I.183, H:E.188 CA.16: 8 residues within 4Å: Chain H: D.179, D.181, E.188, S.221, S.222, K.225, D.235 Ligands: CA.15 5 PLIP interactions: 5 interactions with chain H Metal complexes: H:D.179, H:D.181, H:E.188, H:E.188, H:S.222 CA.19: 6 residues within 4Å: Chain J: D.177, D.179, D.181, I.183, E.188 Ligands: CA.20 5 PLIP interactions: 5 interactions with chain J Metal complexes: J:D.179, J:D.179, J:D.181, J:I.183, J:E.188 CA.20: 8 residues within 4Å: Chain J: D.179, D.181, E.188, S.221, S.222, K.225, D.235 Ligands: CA.19 5 PLIP interactions: 5 interactions with chain J Metal complexes: J:D.179, J:D.181, J:E.188, J:S.222, J:D.235 CA.21: 6 residues within 4Å: Chain K: D.177, D.179, D.181, I.183, E.188 Ligands: CA.22 5 PLIP interactions: 5 interactions with chain K Metal complexes: K:D.179, K:D.179, K:D.181, K:I.183, K:E.188 CA.22: 8 residues within 4Å: Chain K: D.179, D.181, E.188, S.221, S.222, K.225, D.235 Ligands: CA.21 5 PLIP interactions: 5 interactions with chain K Metal complexes: K:D.179, K:D.181, K:E.188, K:E.188, K:S.222

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 2 residues within 4Å: Chain C: R.267, Y.268 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Y.268, C:Y.268 Salt bridges: C:R.267 SO4.11: 2 residues within 4Å: Chain F: R.267, Y.268 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:Y.268, F:Y.268 Salt bridges: F:R.267 SO4.17: 2 residues within 4Å: Chain I: R.267, Y.268 3 PLIP interactions: 3 interactions with chain I Hydrogen bonds: I:Y.268, I:Y.268 Salt bridges: I:R.267 SO4.23: 2 residues within 4Å: Chain L: R.267, Y.268 3 PLIP interactions: 3 interactions with chain L Hydrogen bonds: L:Y.268, L:Y.268 Salt bridges: L:R.267

4 x ZN: ZINC ION(Non-covalent)

ZN.6: 1 residues within 4Å: Chain C: Y.728 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:Y.728 ZN.12: 1 residues within 4Å: Chain F: Y.728 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:Y.728 ZN.18: 1 residues within 4Å: Chain I: Y.728 1 PLIP interactions: 1 interactions with chain I Metal complexes: I:Y.728 ZN.24: 1 residues within 4Å: Chain L: Y.728 1 PLIP interactions: 1 interactions with chain L Metal complexes: L:Y.728

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, K. et al., Atomic Structures of Anthrax Prechannel Bound with Full-Length Lethal and Edema Factors. Structure (2020)

Release Date

2020-12-16

Peptides

Protective antigen: ADGJ
Protective antigen: BEHK
Lethal factor: CFIL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
C

G
D

J
E

B
B

E
F

H
G

K
H

C
L

F
I

I
J

L
K

Protective antigen

Protective antigen

Lethal factor

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