SMTL ID : 6w2k.1 (1 other biounit)

Crystal structure of laccase from Thermus thermophilus HB27 in reducing conditions (Na2,S2,O2, 20 min)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

6 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 9 residues within 4Å: Chain A: P.169, M.170, M.173, M.273, M.332, M.333, A.335 Ligands: MPD.4, CU.11 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:M.173 Hydrogen bonds: A:M.333 MPD.2: 4 residues within 4Å: Chain A: K.416, G.417, V.439, G.440 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.417 MPD.3: 5 residues within 4Å: Chain A: G.118, W.172, D.430, R.431 Ligands: MPD.4 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.172, A:W.172, A:D.430 Hydrogen bonds: A:R.431 Water bridges: A:R.336, A:D.430 MPD.4: 8 residues within 4Å: Chain A: P.169, W.172, A.334, A.335, R.336, R.431 Ligands: MPD.1, MPD.3 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:W.172 MPD.5: 5 residues within 4Å: Chain A: E.105, P.315, L.317, W.395, R.414 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.315 Hydrogen bonds: A:W.395 MPD.6: 2 residues within 4Å: Chain A: G.33, Q.34 No protein-ligand interaction detected (PLIP)

6 x CU: COPPER (II) ION(Non-covalent)

CU.7: 6 residues within 4Å: Chain A: H.73, H.75, W.111, H.113, H.424 Ligands: CU.10 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.75, A:H.113, A:H.424 CU.8: 5 residues within 4Å: Chain A: H.371, C.423, I.425, H.428, M.433 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.371, A:C.423, A:H.428 CU.9: 6 residues within 4Å: Chain A: H.73, H.115, H.374, H.376, H.422 Ligands: CU.10 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.115, A:H.376, A:H.422 CU.10: 6 residues within 4Å: Chain A: H.73, H.75, H.374, H.376 Ligands: CU.7, CU.9 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.73, A:H.374 CU.11: 3 residues within 4Å: Chain A: M.170, M.173 Ligands: MPD.1 No protein-ligand interaction detected (PLIP) CU.12: 3 residues within 4Å: Chain A: M.271, A.282, M.332 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miranda-Blancas, R. et al., Dynamic behavior of alpha-beta loop at laccase of Thermus thermophilus. To Be Published

Release Date

2021-03-10

Peptides

Laccase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Laccase

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