SMTL ID : 6w2k.2 (1 other biounit)

Crystal structure of laccase from Thermus thermophilus HB27 in reducing conditions (Na2,S2,O2, 20 min)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 6 residues within 4Å: Chain A: P.169, W.172, M.333, A.334, A.335, R.431 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.169 MPD.2: 5 residues within 4Å: Chain A: P.320, V.321, V.322, T.323, V.360 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.320

1 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.3: 5 residues within 4Å: Chain A: K.82, K.416, G.417, V.439, G.440 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:K.416

5 x CU: COPPER (II) ION(Non-covalent)

CU.4: 5 residues within 4Å: Chain A: H.73, H.75, W.111, H.113, H.424 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.75, A:H.113, A:H.424 CU.5: 5 residues within 4Å: Chain A: H.371, C.423, I.425, H.428, M.433 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.371, A:C.423, A:H.428 CU.6: 6 residues within 4Å: Chain A: H.73, H.115, H.374, H.376, H.422 Ligands: CU.7 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.115, A:H.376, A:H.422 CU.7: 5 residues within 4Å: Chain A: H.73, H.75, H.374, H.376 Ligands: CU.6 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.73, A:H.374 CU.8: 5 residues within 4Å: Chain A: M.274, D.275, M.276, H.281, M.283 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.281

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miranda-Blancas, R. et al., Dynamic behavior of alpha-beta loop at laccase of Thermus thermophilus. To Be Published

Release Date

2021-03-10

Peptides

Laccase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Laccase

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