SMTL ID : 6w65.1 (2 other biounits)

Human PARP16 in complex with RBN010860

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.13 Å

Oligo State

monomer

Ligands

1 x T9D: 5-{5-[(piperidin-4-yl)oxy]-2H-isoindol-2-yl}-4-(trifluoromethyl)pyridazin-3(2H)-one(Non-covalent)

T9D.1: 11 residues within 4Å: Chain A: F.149, H.150, G.151, L.174, Y.180, L.181, T.182, L.187, A.188, Y.191, Y.252 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.180, A:Y.180, A:Y.252, A:Y.252 Hydrogen bonds: A:G.151, A:G.151 Water bridges: A:Y.180 pi-Stacking: A:Y.191 Halogen bonds: A:F.149

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.2: 8 residues within 4Å: Chain A: H.150, G.151, S.152, N.156, I.160, L.165, H.166, H.168 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:N.156 Hydrogen bonds: A:H.166 Water bridges: A:R.153, A:N.156, A:N.156, A:H.166 Salt bridges: A:H.150, A:H.166, A:H.168

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: A.10, R.13, D.14, T.94, I.95, H.96 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.10, A:R.13, A:T.94, A:T.94, A:H.96 GOL.4: 3 residues within 4Å: Chain A: S.31, Y.32, E.155 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.32, A:E.155 Water bridges: A:Q.30 GOL.5: 5 residues within 4Å: Chain A: M.2, S.89, S.90, K.91 Ligands: GOL.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.90, A:S.90 GOL.6: 4 residues within 4Å: Chain A: S.90, K.91, F.129 Ligands: GOL.5 No protein-ligand interaction detected (PLIP)

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 2 residues within 4Å: Chain A: N.65, H.200 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wigle, T.J. et al., In Vitro and Cellular Probes to Study PARP Enzyme Target Engagement. Cell Chem Biol (2020)

Release Date

2020-10-07

Peptides

Protein mono-ADP-ribosyltransferase PARP16: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein mono-ADP-ribosyltransferase PARP16

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