SMTL ID : 6w65.3 (2 other biounits)

Human PARP16 in complex with RBN010860

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.13 Å

Oligo State

monomer

Ligands

1 x T9D: 5-{5-[(piperidin-4-yl)oxy]-2H-isoindol-2-yl}-4-(trifluoromethyl)pyridazin-3(2H)-one(Non-covalent)

T9D.1: 11 residues within 4Å: Chain A: F.149, H.150, G.151, L.174, Y.180, L.181, T.182, L.187, A.188, Y.191, Y.252 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.174, A:Y.180, A:Y.252 Hydrogen bonds: A:G.151, A:G.151 pi-Stacking: A:Y.191, A:Y.191 Halogen bonds: A:F.149

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: H.150, S.152, I.160, H.166 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.150

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 6 residues within 4Å: Chain A: A.10, R.13, D.14, T.94, I.95, H.96 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.13, A:D.14, A:D.14 Water bridges: A:I.95

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain A: A.98, F.103, P.120 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.98, A:P.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wigle, T.J. et al., In Vitro and Cellular Probes to Study PARP Enzyme Target Engagement. Cell Chem Biol (2020)

Release Date

2020-10-07

Peptides

Protein mono-ADP-ribosyltransferase PARP16: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Protein mono-ADP-ribosyltransferase PARP16

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