SMTL ID : 6w9g.1

Crystal Structure of the Fab fragment of humanized 5c8 antibody containing the fluorescent non-canonical amino acid L-(7-hydroxycoumarin-4-yl)ethylglycine in complex with CD40L at pH 6.8

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.82 Å
Oligo State
hetero-3-3-3-mer
Ligands
3 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
8 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
21 x TMO: trimethylamine oxide(Non-covalent)
3 x ETE: 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL(Non-covalent)
1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Henderson, J.N. et al., Structural Insights into How Protein Environments Tune the Spectroscopic Properties of a Noncanonical Amino Acid Fluorophore. Biochemistry (2020)
Release Date
2020-12-23
Peptides
CD40 ligand: ABC
5c8* Fab (heavy chain): DFH
5c8* Fab (light chain): EGI
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
H
F
K
H
X
E
L
G
M
I
Y

CD40 ligand

Toggle Identical (AB)

5c8* Fab (heavy chain)

5c8* Fab (light chain)

Toggle Identical (GI)

Related Entries With Identical Sequence

1aly.1 | 1i9r.1 | 6bjz.1 | 6w4w.1 | 6w5a.1