SMTL ID : 6wak.1 (1 other biounit)

A crystal structure of EGFR(T790M/V948R) in complex with LN3754

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 21 residues within 4Å: Chain A: L.24, G.25, S.26, G.27, A.28, F.29, G.30, V.32, A.49, K.51, M.96, Q.97, L.98, M.99, C.103, D.143, R.147, N.148, L.150, D.161 Ligands: MG.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:A.28, A:F.29, A:Q.97, A:M.99, A:C.103, A:D.143, A:R.147, A:R.147, A:N.148 Water bridges: A:G.30, A:K.51, A:R.147 Salt bridges: A:K.51 ANP.3: 21 residues within 4Å: Chain B: L.24, G.25, S.26, G.27, A.28, F.29, G.30, V.32, A.49, K.51, M.96, Q.97, L.98, M.99, C.103, D.143, R.147, N.148, L.150, D.161 Ligands: MG.4 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:A.28, B:F.29, B:K.51, B:Q.97, B:M.99, B:C.103, B:D.143, B:D.143, B:D.143, B:R.147, B:N.148 Water bridges: B:G.27, B:G.27, B:Q.97 Salt bridges: B:K.51

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: K.51, N.148, D.161 Ligands: ANP.1 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.161, H2O.2 MG.4: 4 residues within 4Å: Chain B: K.51, N.148, D.161 Ligands: ANP.3 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.161, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wittlinger, F. et al., Design of a "Two-in-One" Mutant-Selective Epidermal Growth Factor Receptor Inhibitor That Spans the Orthosteric and Allosteric Sites. J.Med.Chem. (2022)

Release Date

2021-03-31

Peptides

Epidermal growth factor receptor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
A

Epidermal growth factor receptor

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