SMTL ID : 6wc6.1

Crystal structure of a truncated LSD1:CoREST in the presence of an LSD1-NT peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAD.1: 36 residues within 4Å: Chain A: G.115, G.117, V.118, S.119, L.137, E.138, A.139, R.140, G.144, G.145, R.146, V.147, L.159, G.160, A.161, M.162, V.163, T.418, A.419, V.420, T.454, L.455, P.456, V.459, V.467, L.489, W.581, W.586, S.590, Y.591, G.630, E.631, A.639, T.640, V.641, A.644 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:A.161, A:L.489, A:W.581, A:Y.591 Hydrogen bonds: A:V.118, A:S.119, A:S.119, A:S.119, A:A.139, A:R.140, A:R.140, A:G.144, A:R.146, A:M.162, A:V.163, A:V.163, A:V.420, A:V.420, A:E.631, A:V.641 Salt bridges: A:R.146, A:R.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zeng, D. et al., Identification of structure and nucleosome binding within the N-terminus of lysine specific demethylase 1. To Be Published

Release Date

2021-06-30

Peptides

Lysine-specific histone demethylase 1A: A
REST corepressor 1: B
LSD1-NT peptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Lysine-specific histone demethylase 1A

REST corepressor 1

LSD1-NT peptide

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