SMTL ID : 6wcv.1

Tartryl-CoA bound to human GTP-specific succinyl-CoA synthetase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.52 Å

Oligo State

hetero-1-1-mer

Ligands

1 x TUY: (3S,5S,9R,20R,21R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9,20, 21-pentahydroxy-8,8-dimethyl-10,14,19-trioxo-2,4,6-trioxa-18-thia-11,15-diaza-3,5-diphosphadocosan-22-oic acid 3,5-dioxide (non-preferred name)(Non-covalent)

TUY.1: 34 residues within 4Å: Chain A: Q.21, G.22, T.24, G.25, K.26, Q.27, G.28, T.46, T.47, P.48, K.50, Y.79, V.80, P.81, P.82, F.84, A.87, A.88, E.91, I.103, T.104, E.105, N.131, C.132, P.133, I.145, S.162, G.163, T.164, H.259 Chain B: G.272, A.273, G.274, G.298 28 PLIP interactions: 25 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:Q.27, A:T.104 Hydrogen bonds: A:G.22, A:T.24, A:K.26, A:Q.27, A:I.103, A:E.105, A:S.162, A:G.163, A:T.164, A:T.164, B:A.273, B:G.274, B:G.298 Water bridges: A:Q.21, A:T.24, A:T.24, A:G.25, A:G.25, A:K.26, A:G.28, A:K.50, A:E.91, A:E.105, A:H.259 Salt bridges: A:K.50, A:H.259

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, J. et al., Tartryl-CoA inhibits succinyl-CoA synthetase. Acta Crystallogr.,Sect.F (2020)

Release Date

2020-07-15

Peptides

Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial: A
Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial

Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial

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