SMTL ID : 6wf3.6 (5 other biounits)

Crystal structure of human Naa50 in complex with a cofactor derived inhibitor (compound 1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

monomer

Ligands

1 x ACE- MET- LEU- GLY- PRO- NH2: ACE-MET-LEU-GLY-PRO-NH2(Non-covalent)

ACE-MET-LEU-GLY-PRO-NH2.1: 19 residues within 4Å: Chain A: F.29, P.30, V.31, S.32, Y.33, F.37, R.64, Y.75, I.76, M.77, T.78, L.79, L.113, H.114, Q.116, Y.140, Y.141, I.144 Ligands: COA.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.33, A:Y.75, A:L.113 Hydrogen bonds: A:Y.33, A:M.77, A:L.79, A:H.114, A:Y.140, A:Y.141 Water bridges: A:H.114, A:H.114

1 x COA: COENZYME A(Non-covalent)

COA.2: 25 residues within 4Å: Chain A: I.28, F.29, L.79, G.80, C.81, R.86, R.87, L.88, G.89, I.90, G.91, T.92, L.113, H.114, V.115, N.119, S.121, A.122, D.124, F.125, Y.126, K.128, F.129 Ligands: ACE-MET-LEU-GLY-PRO-NH2.1, ACE-MET-LEU-GLY-PRO-NH2.1 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:I.28, A:F.29, A:L.79, A:A.122, A:F.125 Hydrogen bonds: A:L.79, A:C.81, A:R.86, A:R.87, A:R.87, A:L.88, A:G.89, A:I.90, A:G.91, A:T.92, A:T.92, A:N.119, A:S.121, A:S.121, A:D.124, A:K.128 Water bridges: A:S.121 Salt bridges: A:R.87, A:K.128 pi-Cation interactions: A:R.87, A:R.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kung, P.P. et al., Characterization of SpecificN-alpha-Acetyltransferase 50 (Naa50) Inhibitors Identified Using a DNA Encoded Library. Acs Med.Chem.Lett. (2020)

Release Date

2020-07-01

Peptides

N-alpha-acetyltransferase 50: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

N-alpha-acetyltransferase 50

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