SMTL ID : 6wf5.1 (1 other biounit)

Crystal structure of human Naa50 in complex with a truncated cofactor derived inhibitor (compound 2)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

monomer

Ligands

1 x ACE- MET- LEU- GLY- PRO- NH2: ACE-MET-LEU-GLY-PRO-NH2(Non-covalent)

ACE-MET-LEU-GLY-PRO-NH2.1: 17 residues within 4Å: Chain A: F.29, P.30, V.31, Y.33, F.37, Y.75, M.77, T.78, L.79, L.113, H.114, Q.116, Y.140, Y.141, K.142, I.144 Ligands: U44.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.33, A:F.37, A:Y.75, A:L.113, A:K.142 Hydrogen bonds: A:M.77, A:L.79, A:H.114, A:Y.140, A:Y.140, A:Y.141, A:K.142 Water bridges: A:H.114, A:H.114

1 x U44: (2R)-2-hydroxy-3,3-dimethyl-N-{3-oxo-3-[(2-sulfanylethyl)amino]propyl}butanamide(Non-covalent)

U44.2: 15 residues within 4Å: Chain A: I.28, F.29, L.79, G.80, C.81, R.86, G.91, L.113, V.115, N.119, S.121, F.125, Y.126 Ligands: ACE-MET-LEU-GLY-PRO-NH2.1, ACE-MET-LEU-GLY-PRO-NH2.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.28, A:F.29, A:L.79, A:F.125 Hydrogen bonds: A:L.79, A:C.81, A:N.119, A:S.121 Water bridges: A:S.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kung, P.P. et al., Characterization of SpecificN-alpha-Acetyltransferase 50 (Naa50) Inhibitors Identified Using a DNA Encoded Library. Acs Med.Chem.Lett. (2020)

Release Date

2020-07-01

Peptides

N-alpha-acetyltransferase 50: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

N-alpha-acetyltransferase 50

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