SMTL ID : 6wkn.1

PL-bound rat TRPV2 in nanodiscs

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x LQ4: piperlongumine(Non-covalent)

LQ4.1: 12 residues within 4Å: Chain A: L.513, T.516, T.522, Y.525, S.526, I.529, Q.530 Chain B: R.539, V.543, V.635, L.636, N.639 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:L.513, A:T.516, A:Y.525, B:V.543 Hydrogen bonds: A:T.522, A:Q.530, B:R.539, B:N.639 LQ4.2: 12 residues within 4Å: Chain B: L.513, T.516, T.522, Y.525, S.526, I.529, Q.530 Chain C: R.539, V.543, V.635, L.636, N.639 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain C Hydrophobic interactions: B:L.513, B:T.516, B:Y.525, C:V.543 Hydrogen bonds: B:T.522, B:Q.530, C:R.539, C:N.639 LQ4.3: 12 residues within 4Å: Chain C: L.513, T.516, T.522, Y.525, S.526, I.529, Q.530 Chain D: R.539, V.543, V.635, L.636, N.639 8 PLIP interactions: 5 interactions with chain C, 3 interactions with chain D Hydrophobic interactions: C:L.513, C:T.516, C:Y.525, D:V.543 Hydrogen bonds: C:T.522, C:Q.530, D:R.539, D:N.639 LQ4.4: 12 residues within 4Å: Chain A: R.539, V.543, V.635, L.636, N.639 Chain D: L.513, T.516, T.522, Y.525, S.526, I.529, Q.530 8 PLIP interactions: 5 interactions with chain D, 3 interactions with chain A Hydrophobic interactions: D:L.513, D:T.516, D:Y.525, A:V.543 Hydrogen bonds: D:T.522, D:Q.530, A:R.539, A:N.639

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Conde, J. et al., Allosteric Antagonist Modulation of TRPV2 by Piperlongumine Impairs Glioblastoma Progression. Acs Cent.Sci. (2021)

Release Date

2021-04-21

Peptides

Transient receptor potential cation channel subfamily V member 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Transient receptor potential cation channel subfamily V member 2

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