SMTL ID : 8ffl.1

Wildtype rat TRPV2 in nanodiscs bound to RR

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x PEX: 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE(Non-covalent)

PEX.1: 13 residues within 4Å: Chain A: F.395, N.396, C.399, Y.400, Y.403, Y.447, L.448, Q.452, E.473, F.476, Y.514, Y.515, Y.675 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.403, A:Y.447, A:Y.447, A:L.448 Hydrogen bonds: A:N.396, A:E.473, A:Y.515 PEX.2: 13 residues within 4Å: Chain B: F.395, N.396, C.399, Y.400, Y.403, Y.447, L.448, Q.452, E.473, F.476, Y.514, Y.515, Y.675 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:Y.403, B:Y.447, B:Y.447, B:Y.447, B:L.448 Hydrogen bonds: B:N.396, B:E.473, B:Y.515 PEX.3: 9 residues within 4Å: Chain C: F.395, N.396, C.399, Y.400, Y.447, L.448, E.473, Y.515, Y.675 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:Y.447, C:Y.447, C:Y.447, C:L.448 Hydrogen bonds: C:N.396, C:E.473, C:Y.515 PEX.4: 13 residues within 4Å: Chain D: F.395, N.396, C.399, Y.400, Y.403, Y.447, L.448, Q.452, E.473, F.476, Y.514, Y.515, Y.675 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:Y.403, D:L.448 Hydrogen bonds: D:N.396, D:E.473, D:Y.515

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pumroy, R.A. et al., Molecular details of ruthenium red pore block in TRPV channels. Embo Rep. (2024)

Release Date

2024-02-07

Peptides

Transient receptor potential cation channel subfamily V member 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Transient receptor potential cation channel subfamily V member 2

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