- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.18 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 14 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 5 residues within 4Å:- Chain A: P.47, I.48, C.109, Q.110, E.111
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:I.48, A:I.48, A:E.111, A:E.111
GOL.3: 3 residues within 4Å:- Chain A: H.139, K.140, K.263
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.138, A:K.140
GOL.4: 3 residues within 4Å:- Chain A: K.144, D.274, E.278
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.144, A:D.274, A:E.278
GOL.5: 3 residues within 4Å:- Chain A: E.248, R.291, T.330
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.291, A:T.330
GOL.11: 4 residues within 4Å:- Chain B: H.139, K.140, K.263, E.266
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:K.140, B:K.140, B:K.140, B:K.140, B:K.263
GOL.12: 5 residues within 4Å:- Chain B: T.3, E.248, R.291, T.330, V.333
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:T.3, B:T.3, B:R.291, B:G.332, B:V.333
GOL.15: 5 residues within 4Å:- Chain B: V.18, R.22, P.23, R.40, N.45
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.22, B:R.40, B:R.40, B:N.45
GOL.16: 5 residues within 4Å:- Chain B: T.143, K.144, Y.146, L.270, D.274
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.144, B:K.144, B:K.144, B:Y.146
GOL.18: 3 residues within 4Å:- Chain C: H.139, K.140, K.263
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:H.139, C:K.140, C:K.263
- Water bridges: C:P.136
GOL.19: 5 residues within 4Å:- Chain C: P.289, P.293, L.305, Q.307, C.334
No protein-ligand interaction detected (PLIP)GOL.20: 3 residues within 4Å:- Chain C: V.88, Q.89, P.94
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:V.88, C:Q.89
- Water bridges: C:M.96
GOL.23: 5 residues within 4Å:- Chain C: P.47, I.48, C.109, Q.110, E.111
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:I.48, C:C.109, C:Q.110, C:E.111, C:E.111, C:E.111
GOL.24: 3 residues within 4Å:- Chain C: Q.149, H.285, T.290
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:Q.149, C:Q.149
- Water bridges: C:Q.287
GOL.25: 3 residues within 4Å:- Chain C: E.248, R.291, T.330
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:E.248, C:R.291, C:R.291, C:T.330
- Water bridges: C:E.248
- 3 x U5A: [(2Z,3aS,4R,6Z,10aR)-2,6-diiminooctahydro-1H,8H-pyrrolo[1,2-c]purin-4-yl]methyl carbamate(Non-covalent)
U5A.6: 13 residues within 4Å:- Chain A: S.159, F.165, I.172, L.173, N.216, Q.226, C.228, D.239, M.241, Y.255, D.272, Y.273, V.276
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:F.165
- Hydrogen bonds: A:N.216, A:Q.226, A:Q.226, A:T.230, A:Y.273, A:Y.273
- Salt bridges: A:D.239
U5A.13: 13 residues within 4Å:- Chain B: S.159, F.165, I.172, L.173, N.216, Q.226, C.228, D.239, M.241, Y.255, D.272, Y.273, V.276
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:F.165
- Hydrogen bonds: B:Q.226, B:Q.226, B:Y.255, B:Y.273, B:Y.273
- Water bridges: B:Y.198, B:N.216
- Salt bridges: B:D.239
U5A.21: 10 residues within 4Å:- Chain C: S.159, F.165, N.216, Q.226, C.228, D.239, M.241, Y.255, Y.273, V.276
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:F.165
- Hydrogen bonds: C:S.159, C:Q.226, C:D.272
- Salt bridges: C:D.239
- 3 x FE: FE (III) ION(Non-covalent)
FE.7: 5 residues within 4Å:- Chain A: N.158, H.164, I.168, H.169, D.280
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:H.164, A:H.169, A:D.280, H2O.1, H2O.3
FE.14: 4 residues within 4Å:- Chain B: N.158, H.164, H.169, D.280
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:H.164, B:H.169, B:D.280, H2O.4, H2O.7
FE.22: 3 residues within 4Å:- Chain C: H.164, H.169, D.280
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:H.164, C:H.169, C:D.280, H2O.11, H2O.12
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.8: 5 residues within 4Å:- Chain A: S.41, H.42, V.67, N.69, N.70
Ligand excluded by PLIPCL.9: 3 residues within 4Å:- Chain A: Q.149, I.281, H.285
Ligand excluded by PLIPCL.26: 5 residues within 4Å:- Chain C: S.41, H.42, V.67, N.69, N.70
Ligand excluded by PLIPCL.27: 4 residues within 4Å:- Chain C: I.148, Q.149, I.281, H.285
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lukowski, A.L. et al., Structural basis for divergent C-H hydroxylation selectivity in two Rieske oxygenases. Nat Commun (2020)
- Release Date
- 2020-06-17
- Peptides
- SxtDIOX: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.18 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 14 x GOL: GLYCEROL(Non-functional Binders)
- 3 x U5A: [(2Z,3aS,4R,6Z,10aR)-2,6-diiminooctahydro-1H,8H-pyrrolo[1,2-c]purin-4-yl]methyl carbamate(Non-covalent)
- 3 x FE: FE (III) ION(Non-covalent)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lukowski, A.L. et al., Structural basis for divergent C-H hydroxylation selectivity in two Rieske oxygenases. Nat Commun (2020)
- Release Date
- 2020-06-17
- Peptides
- SxtDIOX: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C