- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.74 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 3 x 9SL: [(3aS,4R,10aS)-2,6-diamino-10,10-dihydroxy-3a,4,9,10-tetrahydro-3H,8H-pyrrolo[1,2-c]purin-4-yl]methyl carbamate(Non-covalent)
9SL.2: 10 residues within 4Å:- Chain A: S.159, F.165, Q.226, C.228, D.239, M.241, Y.255, D.272, Y.273, V.276
12 PLIP interactions:12 interactions with chain A- Hydrogen bonds: A:S.159, A:N.216, A:Q.226
- Water bridges: A:Q.226, A:D.239, A:Y.255, A:Y.255, A:Y.255, A:D.272, A:D.272, A:D.280
- Salt bridges: A:D.239
9SL.13: 12 residues within 4Å:- Chain B: S.159, F.165, I.172, N.216, Q.226, C.228, D.239, M.241, Y.255, D.272, Y.273, V.276
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:S.159, B:N.216, B:Q.226, B:Y.255, B:Y.273
- Water bridges: B:N.216, B:Q.226, B:Y.273
- Salt bridges: B:D.239
9SL.22: 11 residues within 4Å:- Chain C: S.159, F.165, N.216, Q.226, C.228, D.239, M.241, Y.255, D.272, Y.273, V.276
16 PLIP interactions:16 interactions with chain C- Hydrogen bonds: C:S.159, C:Q.226, C:Y.273
- Water bridges: C:N.216, C:N.216, C:Q.226, C:Q.226, C:T.230, C:T.230, C:Y.255, C:Y.255, C:Y.255, C:D.272, C:D.272, C:Y.273
- Salt bridges: C:D.239
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 3 residues within 4Å:- Chain A: H.139, K.140, K.263
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.140, A:K.140, A:K.263, A:K.263
GOL.4: 4 residues within 4Å:- Chain A: P.47, I.48, C.109, E.111
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:I.48, A:I.48, A:E.111
- Water bridges: A:C.109
GOL.5: 3 residues within 4Å:- Chain A: K.144, D.274, E.278
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.144, A:K.144
GOL.6: 5 residues within 4Å:- Chain A: V.88, Q.89, P.94, M.96, V.97
3 PLIP interactions:3 interactions with chain A- Water bridges: A:V.88, A:P.94, A:M.96
GOL.7: 5 residues within 4Å:- Chain A: E.111, R.112, Y.113, G.114, W.133
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Y.113, A:G.114, A:W.133
- Water bridges: A:E.111, A:E.111
GOL.14: 2 residues within 4Å:- Chain B: E.19, D.20
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.19, B:D.20
- Water bridges: B:K.17
GOL.15: 4 residues within 4Å:- Chain B: P.23, R.40, Q.44, N.45
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.40, B:R.40
GOL.16: 4 residues within 4Å:- Chain B: E.248, R.291, T.330, Y.331
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.248, B:R.291
- Water bridges: B:T.330
GOL.23: 3 residues within 4Å:- Chain C: H.139, K.140, K.263
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:H.139, C:K.140, C:K.140, C:K.263
GOL.24: 3 residues within 4Å:- Chain C: E.248, R.291, T.330
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:R.291, C:T.330
- Water bridges: C:T.330, C:V.333, C:V.333
GOL.25: 3 residues within 4Å:- Chain C: K.187, W.217, R.219
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:R.219
GOL.26: 4 residues within 4Å:- Chain C: W.12, H.108, C.109, Q.110
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:H.108, C:C.109
- 3 x FE: FE (III) ION(Non-covalent)
FE.8: 3 residues within 4Å:- Chain A: H.164, H.169, D.280
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:H.164, A:H.169, A:D.280, H2O.7, H2O.8
FE.17: 3 residues within 4Å:- Chain B: H.164, H.169, D.280
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:H.164, B:H.169, B:D.280, H2O.19, H2O.19
FE.27: 4 residues within 4Å:- Chain C: N.158, H.164, H.169, D.280
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:H.164, C:H.169, C:D.280, H2O.30, H2O.31
- 8 x CL: CHLORIDE ION(Non-functional Binders)
CL.9: 5 residues within 4Å:- Chain A: S.41, H.42, V.67, N.69, N.70
Ligand excluded by PLIPCL.10: 4 residues within 4Å:- Chain A: H.93, P.94, D.95, M.96
Ligand excluded by PLIPCL.11: 4 residues within 4Å:- Chain A: P.23, R.40, Q.44, N.45
Ligand excluded by PLIPCL.18: 2 residues within 4Å:- Chain B: H.139, K.140
Ligand excluded by PLIPCL.19: 5 residues within 4Å:- Chain B: Y.13, H.222, P.223, L.224, C.225
Ligand excluded by PLIPCL.20: 5 residues within 4Å:- Chain B: S.41, H.42, V.67, N.69, N.70
Ligand excluded by PLIPCL.28: 3 residues within 4Å:- Chain C: N.11, H.222, P.223
Ligand excluded by PLIPCL.29: 2 residues within 4Å:- Chain C: R.219, Y.227
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, J. et al., Design principles for site-selective hydroxylation by a Rieske oxygenase. Nat Commun (2022)
- Release Date
- 2022-01-19
- Peptides
- SxtDIOX: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
AC
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.74 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 3 x 9SL: [(3aS,4R,10aS)-2,6-diamino-10,10-dihydroxy-3a,4,9,10-tetrahydro-3H,8H-pyrrolo[1,2-c]purin-4-yl]methyl carbamate(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- 3 x FE: FE (III) ION(Non-covalent)
- 8 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, J. et al., Design principles for site-selective hydroxylation by a Rieske oxygenase. Nat Commun (2022)
- Release Date
- 2022-01-19
- Peptides
- SxtDIOX: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
AC
B