SMTL ID : 6wo2.2 (1 other biounit)

Crystal Structure of the Grb2 SH2 Domain in Complex with a Tripeptide: Ac-pY-Ac6c-N-isohexyl

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ACE- PTR- 02K- ASN- U67: ACE-PTR-02K-ASN-U67(Non-covalent)

ACE-PTR-02K-ASN-U67.1: 13 residues within 4Å: Chain A: R.15, R.34, S.36, E.37, S.38, S.44, Q.54, H.55, F.56, K.57, L.59, L.68, W.69 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:Q.54, A:H.55, A:F.56, A:F.56, A:K.57, A:W.69 Hydrogen bonds: A:R.15, A:R.15, A:S.36, A:S.38, A:S.44, A:H.55, A:K.57, A:L.68 Salt bridges: A:R.15, A:R.34, A:K.57 pi-Cation interactions: A:R.15

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: E.2, M.3, K.4, H.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.4

1 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.3: 5 residues within 4Å: Chain A: E.2, K.4, H.6, P.7, D.98 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cramer, D.L. et al., Some thermodynamic effects of varying nonpolar surfaces in protein-ligand interactions. Eur.J.Med.Chem. (2020)

Release Date

2020-09-02

Peptides

Growth factor receptor-bound protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Growth factor receptor-bound protein 2

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