SMTL ID : 6wqt.1

Xanthomonas citri Methionyl-tRNA synthetase in complex with REP3123

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.164, C.167, C.177, C.180 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.164, A:C.167, A:C.177, A:C.180

1 x U81: 5-[(3-{[(4R)-6,8-dibromo-3,4-dihydro-2H-1-benzopyran-4-yl]amino}propyl)amino]thieno[3,2-b]pyridin-7(6H)-one(Non-covalent)

U81.2: 15 residues within 4Å: Chain A: A.31, L.32, Y.34, D.71, H.73, G.74, Y.258, Y.272, V.273, W.274, D.276, Y.281, I.316, F.319, H.320 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.34, A:Y.34, A:H.73, A:V.273, A:I.316, A:F.319 Hydrogen bonds: A:L.32, A:D.71, A:D.71 Water bridges: A:T.75 Halogen bonds: A:Y.281

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mercaldi, G.F. et al., Molecular basis for diaryldiamine selectivity and competition with tRNA in a type 2 methionyl-tRNA synthetase from a Gram-negative bacterium. J.Biol.Chem. (2021)

Release Date

2021-04-21

Peptides

Methionine--tRNA ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methionine--tRNA ligase

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