SMTL ID : 6ws6.1 (2 other biounits)

Structural and functional analysis of a potent sarbecovirus neutralizing antibody

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x JEF: O-(O-(2-AMINOPROPYL)-O'-(2-METHOXYETHYL)POLYPROPYLENE GLYCOL 500)(Non-covalent)

JEF.1: 7 residues within 4Å: Chain A: Y.27, F.29, T.30, Y.54, T.74, W.105, F.106 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.54, A:W.105, A:F.106 Hydrogen bonds: A:F.29, A:T.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pinto, D. et al., Cross-neutralization of SARS-CoV-2 by a human monoclonal SARS-CoV antibody. Nature (2020)

Release Date

2020-05-27

Peptides

S309 antigen-binding (Fab) fragment, heavy chain: A
S309 antigen-binding (Fab) fragment, light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

S309 antigen-binding (Fab) fragment, heavy chain

S309 antigen-binding (Fab) fragment, light chain

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