- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.85 Å
- Oligo State
- hetero-1-1-1-1-1-1-mer
- Ligands
- 10 x CL: CHLORIDE ION(Non-functional Binders)
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.6: 1 residues within 4Å:- Chain C: N.304
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.304
NAG.8: 2 residues within 4Å:- Chain C: N.72, V.75
No protein-ligand interaction detected (PLIP)NAG.9: 3 residues within 4Å:- Chain C: N.35, E.39, N.40
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.35, C:E.39, C:N.40
NAG.10: 3 residues within 4Å:- Chain C: S.402, S.527, N.528
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:S.402
- Hydrogen bonds: C:N.528
NAG.22: 6 residues within 4Å:- Chain A: Y.100
- Chain B: Y.50
- Chain F: D.16, F.19, N.20, V.44
4 PLIP interactions:4 interactions with chain F- Hydrophobic interactions: F:D.16, F:F.19, F:V.44
- Hydrogen bonds: F:N.20
- 1 x ZN: ZINC ION(Non-covalent)
- 7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.12: 6 residues within 4Å:- Chain D: K.43, G.44, L.45
- Chain E: F.99, G.100, P.101
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:L.45, D:L.45
EDO.13: 6 residues within 4Å:- Chain D: S.31, Y.32, D.33, G.98, D.99
- Chain F: K.63
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:D.33, D:D.33
EDO.14: 5 residues within 4Å:- Chain D: V.170, H.171
- Chain E: T.165, E.166, D.168
2 PLIP interactions:1 interactions with chain E, 1 interactions with chain D- Hydrogen bonds: E:T.165
- Water bridges: D:V.170
EDO.16: 5 residues within 4Å:- Chain E: T.5, Q.6, S.7, T.22, R.24
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:S.7, E:T.22, E:R.24, E:R.24
EDO.17: 7 residues within 4Å:- Chain E: Q.38, K.39, P.40, A.84, I.85, K.104, E.166
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:I.85
EDO.18: 7 residues within 4Å:- Chain F: Q.151, G.153, K.155, C.157, F.163, N.164, C.165
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:A.152, F:G.153, F:G.153, F:N.164
EDO.19: 7 residues within 4Å:- Chain E: S.28, I.29, G.30, Y.32, Y.92
- Chain F: D.104, D.105
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:S.28
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McCallum, M. et al., Structural basis of SARS-CoV-2 Omicron immune evasion and receptor engagement. Science (2022)
- Release Date
- 2022-02-02
- Peptides
- S309 heavy chain: A
S309 light chain: B
Angiotensin-converting enzyme 2: C
S304 Fab heavy chain: D
S304 Fab light chain: E
Spike protein S1: F - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
FD
ME
NF
S
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.85 Å
- Oligo State
- hetero-1-1-1-1-1-1-mer
- Ligands
- 10 x CL: CHLORIDE ION(Non-functional Binders)
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x ZN: ZINC ION(Non-covalent)
- 7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McCallum, M. et al., Structural basis of SARS-CoV-2 Omicron immune evasion and receptor engagement. Science (2022)
- Release Date
- 2022-02-02
- Peptides
- S309 heavy chain: A
S309 light chain: B
Angiotensin-converting enzyme 2: C
S304 Fab heavy chain: D
S304 Fab light chain: E
Spike protein S1: F - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
FD
ME
NF
S