SMTL ID : 6wv6.1

Human VKOR with phenindione

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

2 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.1: 11 residues within 4Å: Chain A: S.163, F.223, G.224, I.226, F.227, V.252, S.253, L.260, T.278, N.282 Ligands: UAS.3 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.223, A:I.226, A:F.227, A:V.252 Hydrogen bonds: A:N.282 OLC.2: 2 residues within 4Å: Chain A: G.256, Y.259 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.259, A:Y.259

1 x UAS: Phenindione(Non-covalent)

UAS.3: 18 residues within 4Å: Chain A: S.163, A.166, V.194, F.195, S.197, W.199, G.200, N.220, S.221, L.260, I.263, L.264, L.268, V.274, C.275, T.278, Y.279 Ligands: OLC.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.166, A:V.194, A:F.195, A:L.260, A:L.260 Hydrogen bonds: A:N.220

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, S. et al., Structural basis of antagonizing the vitamin K catalytic cycle for anticoagulation. Science (2021)

Release Date

2020-11-11

Peptides

Vitamin K epoxide reductase, termini restrained by green fluorescent protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Vitamin K epoxide reductase, termini restrained by green fluorescent protein

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