SMTL ID : 6wvg.1 (1 other biounit)

human CD53

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

4 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.1: 10 residues within 4Å: Chain A: F.158, N.159, F.162, I.205, V.208, L.231, I.337, L.340, G.341, F.344 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.158, A:F.158, A:F.158, A:I.205, A:V.208, A:V.208, A:L.231, A:I.337, A:L.340, A:F.344 OLC.2: 3 residues within 4Å: Chain A: L.284, A.316, W.319 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.284, A:A.316, A:W.319, A:W.319, A:W.319 OLC.3: 4 residues within 4Å: Chain A: W.319, N.323, I.327, I.330 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.319, A:N.323, A:I.330 OLC.4: 8 residues within 4Å: Chain A: L.148, L.150, L.151, V.154, F.157, F.158, F.344, Q.351 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.151, A:L.151, A:V.154, A:F.157, A:F.157, A:F.158, A:F.344, A:F.344 Hydrogen bonds: A:L.148, A:L.150, A:Q.351

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 3 residues within 4Å: Chain A: H.268, S.269, N.271 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, Y. et al., Open conformation of tetraspanins shapes interaction partner networks on cell membranes. Embo J. (2020)

Release Date

2020-09-16

Peptides

Green fluorescent protein, Leukocyte surface antigen CD53 chimera: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Green fluorescent protein, Leukocyte surface antigen CD53 chimera

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