SMTL ID : 6x14.1

Inward-facing state of the glutamate transporter homologue GltPh in complex with TFB-TBOA

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-trimer

Ligands

3 x 7O9: (2~{S},3~{S})-2-azanyl-3-[[3-[[4-(trifluoromethyl)phenyl]carbonylamino]phenyl]methoxy]butanedioic acid(Non-covalent)

7O9.1: 17 residues within 4Å: Chain A: I.16, F.50, L.54, M.202, A.205, R.276, S.277, S.278, M.311, T.314, P.356, G.359, A.360, L.387, D.394, R.397, T.398 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.16, A:A.360 Hydrogen bonds: A:S.278, A:T.314, A:G.359, A:T.398, A:T.398 Salt bridges: A:R.397 7O9.4: 17 residues within 4Å: Chain B: I.16, F.50, L.54, M.202, A.205, R.276, S.277, S.278, M.311, T.314, P.356, G.359, A.360, L.387, D.394, R.397, T.398 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:I.16, B:A.360 Hydrogen bonds: B:S.278, B:T.314, B:G.359, B:T.398, B:T.398 Salt bridges: B:R.397 7O9.7: 17 residues within 4Å: Chain C: I.16, F.50, L.54, M.202, A.205, R.276, S.277, S.278, M.311, T.314, P.356, G.359, A.360, L.387, D.394, R.397, T.398 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:I.16, C:A.360 Hydrogen bonds: C:S.278, C:T.314, C:G.359, C:T.398, C:T.398 Salt bridges: C:R.397

6 x 6OU: [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate(Non-covalent)

6OU.2: 11 residues within 4Å: Chain A: Y.4, Y.7, I.8, K.196, I.197, N.199, G.200, Q.203, Y.204 Chain B: I.160, Y.167 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:Y.7, B:Y.167 Hydrogen bonds: A:Y.4 Salt bridges: A:K.196, A:K.196 6OU.3: 10 residues within 4Å: Chain A: L.66, G.69, A.70, I.73, V.86, L.305, T.308, I.309, I.350, A.353 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.66, A:A.70, A:I.73, A:V.86, A:V.86, A:I.350 Hydrogen bonds: A:A.353 6OU.5: 11 residues within 4Å: Chain B: Y.4, Y.7, I.8, K.196, I.197, N.199, G.200, Q.203, Y.204 Chain C: I.160, Y.167 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:Y.7, C:Y.167 Hydrogen bonds: B:Y.4 Salt bridges: B:K.196, B:K.196 6OU.6: 10 residues within 4Å: Chain B: L.66, G.69, A.70, I.73, V.86, L.305, T.308, I.309, I.350, A.353 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:L.66, B:A.70, B:I.73, B:V.86, B:V.86, B:I.350 Hydrogen bonds: B:A.353 6OU.8: 11 residues within 4Å: Chain A: I.160, Y.167 Chain C: Y.4, Y.7, I.8, K.196, I.197, N.199, G.200, Q.203, Y.204 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:Y.7, A:Y.167 Hydrogen bonds: C:Y.4 Salt bridges: C:K.196, C:K.196 6OU.9: 10 residues within 4Å: Chain C: L.66, G.69, A.70, I.73, V.86, L.305, T.308, I.309, I.350, A.353 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:L.66, C:A.70, C:I.73, C:V.86, C:V.86, C:I.350 Hydrogen bonds: C:A.353

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, X. et al., Large domain movements through the lipid bilayer mediate substrate release and inhibition of glutamate transporters. Elife (2020)

Release Date

2020-11-18

Peptides

Glutamate transporter homologue GltPh: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Membrane

We predict this structure to be a membrane protein.
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Glutamate transporter homologue GltPh

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