SMTL ID : 6x2e.1

Crystal Structure of Chlamydia trachomatis mixed (apo/holo) Glyceraldehyde 3-phosphate dehydrogenase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

3 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 19 residues within 4Å: Chain A: G.7, F.8, G.9, R.10, I.11, N.32, D.33, L.34, S.95, T.96, G.97, L.98, T.119, A.120, C.150, T.180, A.181, N.314, Y.318 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:I.11, A:Y.318 Hydrogen bonds: A:F.8, A:F.8, A:R.10, A:I.11, A:N.32, A:T.119, A:N.314 Water bridges: A:N.6, A:F.8, A:G.9, A:G.12, A:R.13, A:E.76, A:E.76, A:G.97, A:T.119, A:T.180, A:A.181 NAD.2: 19 residues within 4Å: Chain C: G.7, F.8, G.9, R.10, I.11, N.32, D.33, L.34, K.77, S.95, T.96, G.97, L.98, T.119, A.120, C.150, A.181, N.314, Y.318 18 PLIP interactions: 17 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:I.11, C:I.11, C:Y.318 Hydrogen bonds: C:F.8, C:F.8, C:R.10, C:I.11, C:N.32, C:K.77, C:N.314 Water bridges: C:F.8, C:G.9, C:G.12, C:G.97, C:T.119, C:A.181, C:A.181, A:D.187 NAD.3: 17 residues within 4Å: Chain D: G.7, F.8, G.9, R.10, I.11, D.33, L.34, S.95, T.96, G.97, L.98, T.119, A.120, C.150, A.181, N.314, Y.318 16 PLIP interactions: 15 interactions with chain D, 1 interactions with chain B Hydrophobic interactions: D:I.11, D:Y.318 Hydrogen bonds: D:F.8, D:F.8, D:R.10, D:I.11, D:L.34, D:N.314 Water bridges: D:F.8, D:G.9, D:G.12, D:G.97, D:T.119, D:A.181, D:A.181, B:D.187

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schormann, N. et al., Chlamydia trachomatis glyceraldehyde 3-phosphate dehydrogenase: Enzyme kinetics, high-resolution crystal structure, and plasminogen binding. Protein Sci. (2020)

Release Date

2020-11-04

Peptides

Glyceraldehyde-3-phosphate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Glyceraldehyde-3-phosphate dehydrogenase

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