SMTL ID : 6x6c.1

Cryo-EM structure of NLRP1-DPP9-VbP complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

2 x GK2: [(2~{R})-1-[(2~{R})-2-azanyl-3-methyl-butanoyl]pyrrolidin-2-yl]boronic acid(Covalent)

GK2.1: 13 residues within 4Å: Chain A: R.161, E.276, E.277, Y.672, Q.676, S.758, Y.759, V.784, Y.790, Y.794, N.838, V.839, H.868 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.784, A:Y.790, A:Y.790, A:Y.794, A:Y.794, A:Y.794, A:V.839 Hydrogen bonds: A:R.161, A:E.276, A:Y.672, A:Y.759, A:Y.790, A:Y.790, A:N.838 GK2.2: 13 residues within 4Å: Chain B: R.161, E.276, E.277, Y.672, Q.676, S.758, Y.759, V.784, Y.790, Y.794, N.838, V.839, H.868 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:V.784, B:Y.790, B:Y.794, B:Y.794, B:V.839 Hydrogen bonds: B:R.161, B:Y.759, B:Y.790, B:Y.790, B:N.838

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hollingsworth, L.R. et al., DPP9 sequesters the C terminus of NLRP1 to repress inflammasome activation. Nature (2021)

Release Date

2021-03-10

Peptides

Dipeptidyl peptidase 9: AB
NACHT, LRR and PYD domains-containing protein 1: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
E

D
F

Dipeptidyl peptidase 9

NACHT, LRR and PYD domains-containing protein 1

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