SMTL ID : 7jn7.1

Human DPP9-CARD8 complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

2 x GK2: [(2~{R})-1-[(2~{R})-2-azanyl-3-methyl-butanoyl]pyrrolidin-2-yl]boronic acid(Covalent)

GK2.1: 12 residues within 4Å: Chain A: R.161, E.277, Y.672, Q.676, S.758, Y.759, V.784, Y.790, Y.794, N.838, V.839, H.868 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.784, A:Y.790, A:Y.794, A:Y.794, A:Y.794, A:V.839 Hydrogen bonds: A:R.161, A:E.276, A:Y.672, A:Y.759, A:Y.790, A:Y.790, A:N.838, A:H.868 GK2.2: 11 residues within 4Å: Chain D: E.276, E.277, Y.672, S.758, Y.759, V.784, Y.790, Y.794, N.838, V.839, H.868 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:V.784, D:Y.790, D:Y.794, D:V.839 Hydrogen bonds: D:E.276, D:Y.672, D:Y.672, D:Y.759, D:Y.790, D:Y.790, D:N.838

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharif, H. et al., Dipeptidyl peptidase 9 sets a threshold for CARD8 inflammasome formation by sequestering its active C-terminal fragment. Immunity (2021)

Release Date

2021-05-19

Peptides

Dipeptidyl peptidase 9: AD
Caspase recruitment domain-containing protein 8: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

B
B

C
C

Dipeptidyl peptidase 9

Caspase recruitment domain-containing protein 8

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