SMTL ID : 6x7r.1

E. coli beta-ketoacyl-[acyl carrier protein] synthase III (FabH) in complex with oxa(dethia)-coenzyme A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

homo-dimer

Ligands

2 x UT7: oxa(dethia)-CoA(Non-covalent)

UT7.1: 23 residues within 4Å: Chain A: D.30, T.31, W.35, R.39, T.40, C.115, R.154, G.155, I.158, I.159, L.192, M.210, G.212, N.213, V.215, F.216, H.247, A.249, N.250, R.252, I.253, N.277, F.307 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:T.40, A:I.159, A:V.215 Hydrogen bonds: A:T.31, A:R.154, A:R.154, A:G.212, A:G.212, A:H.247, A:N.250, A:N.277 Water bridges: A:R.39, A:R.39, A:R.39, A:R.154, A:N.213, A:R.252, A:R.252 Salt bridges: A:R.39, A:R.39, A:R.252 pi-Stacking: A:W.35, A:W.35, A:W.35 pi-Cation interactions: A:R.154 UT7.4: 23 residues within 4Å: Chain B: D.30, T.31, W.35, R.39, T.40, C.115, R.154, G.155, I.158, I.159, L.192, M.210, G.212, N.213, V.215, F.216, H.247, A.249, N.250, R.252, I.253, N.277, F.307 24 PLIP interactions: 24 interactions with chain B Hydrophobic interactions: B:T.40, B:I.159, B:V.215 Hydrogen bonds: B:T.31, B:R.154, B:R.154, B:G.212, B:G.212, B:H.247, B:N.250, B:N.277 Water bridges: B:R.39, B:R.39, B:R.154, B:N.213, B:R.252, B:R.252 Salt bridges: B:R.39, B:R.39, B:R.252 pi-Stacking: B:W.35, B:W.35, B:W.35 pi-Cation interactions: B:R.154

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 1 residues within 4Å: Chain A: D.24 No protein-ligand interaction detected (PLIP) MG.5: 1 residues within 4Å: Chain B: D.24 No protein-ligand interaction detected (PLIP)

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 6 residues within 4Å: Chain A: T.180, H.181, L.182 Chain B: P.107, Y.128, V.134 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.182 Water bridges: A:S.123 DMS.6: 6 residues within 4Å: Chain A: P.107, Y.128, V.134 Chain B: T.180, H.181, L.182 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.182 Water bridges: B:S.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Benjamin, A.B. et al., E. coli beta-ketoacyl-[acyl carrier protein] synthase III (FabH) in complex with oxa(dethia)-coenzyme A. To Be Published

Release Date

2021-06-02

Peptides

3-oxoacyl-[acyl-carrier-protein] synthase 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

3-oxoacyl-[acyl-carrier-protein] synthase 3

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